Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03352 ATGGATGGGGTCGCACGTGCGGACAAGGCTCCGTCCACGGACTTGGCCTCGGAGTGGCGTCCCCGCGGCTCTGCGTTCGTCCCTTGTGTGCCAAAGGCTGGAGAAGAAGCTGCTGCTGCTGCTGAGAAGCCGCAACCGTCTCGCGTGGTTGTGAGGAAGCCCTTGGTGGCTAGGTTGACCAAGGAAATAGTTCAAACATACCAAATATGCAATCCACAGTTTAAATATTCTGAAGATCTTAATCCAAAAAGATTTTTGACCAGCCCGTCAGTGGGAGTGCTTAATGATGGCTATGATAATGTTAACTCAGATCTTATTTTGACAGTGAATTTTGTCTTGAACCATTTAGACAAAAGTAAAAGATATATTGTCAAAGATCTCCTTGGCCATGGAACATTTGGACAAGTGGCTAAATGCTGGGATTCAGATAGCAACAGTTTTGTTGCCGTGAAGATCATTAAAAACCAACCTGCATACTATCAACAAGCACTGGTTGAAGTAACTATCTTATCAACGTTAAATAAGAAGTATGATCCTGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTACATCAACGACATTTGTGCATTTGCTTCGAATTGTTGGACACGAACTTGTATGAGCTTATCAAGATGAATCATTTTAGGGGATTATCCCTTGGTATTGTTCAGCTATTCTCTAAGCAGATTTTATGTGGACTTGCTCTGCTAAAAGAGGCTGGAGTTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACGAGCACTGTGAAGCCAGCAGAAATAAAAATTATTGACTTTGGATCAGCATGCATGGAAAACCGCACTGTTTACTCTTATATTCAGAGTCGATACTATAGATCTCCTGAGGTTCTTCTTGGATATCAATACACAACAGCTATTGATATGTGGTCCTTTGGATGCATAGTGGCGGAATTATTTCTTGGATTACCATTATTCCCTGGAGCTTCAGAATTTGATCTTTTGAAACGAATGATTGAAATACTTGGAGGACAACCACCCGATTATGTACTTAGGGATGCCAAAAACTCAAGTAAATTCTTCAAGTGTGTTGGGAGTCTCCAGAACATAGAGAGCAGTGACAGTTCCAAAAATGGAAGAAGTCTTTATCAAGCATTGACAGTGGAAGAATATGAAACTAGAGAATTGAAGAAGCCAGCAATTGGAAAAGAGTATTTTAATCATATGAATCTAGAGGCAATTGTTACAAACTATCCCTACCGAAAAAATCTAGCTAAAGAAGATATTGTCAAAGAAAGTCAAATACGACTGGCTCTTATTGATTTTTTGAAAGGGCTTGTTGAATTGGATCCTTCAAAGCGCTGGTCACCTGTTCAGGCTTCAAAACACCCTTTTGTAACTGGAGAACCTTTTACACATCCTTACAAGCCTCCCCCTGAGACTCCTCAAATGCCAGTAGTTCAGAATATCAAGGTGGATAATCATCCAGGAGGAGGACACTGGTTTGCTGCTGGTCTATCACCCAATGTTCAGGGCAAAAGCAGAGCTTCCCTCTATAGTAGTCCACACTTTCAAATGGTTCAACATCAGCCCACTAATAGTTATGGGAGTGTAGGAAGCCATGGGAGCTATAATGATAGTATTGGGCTTGGAAGCAGCTACGGAAGTTATGGAGAAAGCACTAACATGTTTGCTTACTATTCACCTATTGGTCCATCTGGTATGAACATGCACAATCAGGGAAGTATATCAATGCTTGGGAATAGTCCTGATGCTAGGAGAAGAGTTAAATACCAACCTGGGAATGGGTTGGGCATAAGTCCATCAGCTGGAAATTTTGCTCCCCTGCCCCTTGGTGCCAGCCCATCTCAATTTACTCCACCTAGTTCCTACAGTCAGGTTTCAGTTGTTTCTCCAGGACACTTTGGACCAACATCTCCTGCAAGAGGAACATCTCACGGATCACCTTTAGGCAAGACAGCTGCAGTTAGCCAGTTTAATAGAAGAAAAAATTGGGGACATTCTGGAAGTCCTCAAGCTCAGGAAACAGCATTTTCTTCACATTGGCAAAGTCAATATCCTGACAGCACAAGCCATACTGAGGGAACATCACAACCTCTTGGCAATTCGCCATCATATCTACAGTCAAATTGTATTCCTGTAAACCGGAAACAGCGAGGAAGTGGAGGATTATCTGCTAACCAGAACATTTCGTGTTTGATTAAGCCCGGTGCTAATTTGAACTCACAAACAGAATTGGTTCATGACAATGCCGAGACAGGCATTTCATTGCCGGATCCTGGCGATTGGGACCCTAATTACAGTGATGAATTACTTCTTCAAGAGGATGGTTCAGATGAAAGCTGTTTGGCAAATGAGTTTGGCAGAAGTATGAATCTTGGATCTACTGAAACATGGGCTGGATTTGGAAGGTTTAACCATGTGTCCAGCTCTAACACTCCAATAATCATGCAAAGATTAAATGGACCAAATCAATCTTTTACTAACGTGGAGATGGGTAGCCTTCCAACGCATGATCTTCAAGCAGCATATGTGCCCTCTCTGTCTAAGCAGTTTCATCTCATGCCTCATATTTTACATAATTCTCCAAGCCGTTTTGGACACCAATCTGTTCAAAGATATACACATGGTAGACCCCCCCAGGGTGCTGATTGGAATCAAATTAAAATTCAGGCTCCTTCCGGTTTCGGCAGTGTGGGTCCTCGTTCTCCGAGGAGTAACTCATTCACCAACAGTATGACATGGGGGCGCAGAATGGATCCTCCAGTATCAAGCATGCCTCCGACTTCCCGCACAAGAAAAGATTATGCAAGGATAGACTAG 2841 0.4234 MDGVARADKAPSTDLASEWRPRGSAFVPCVPKAGEEAAAAAEKPQPSRVVVRKPLVARLTKEIVQTYQICNPQFKYSEDLNPKRFLTSPSVGVLNDGYDNVNSDLILTVNFVLNHLDKSKRYIVKDLLGHGTFGQVAKCWDSDSNSFVAVKIIKNQPAYYQQALVEVTILSTLNKKYDPEDKHHIVRIYDYFVHQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKEAGVIHCDLKPENILLCTSTVKPAEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLKRMIEILGGQPPDYVLRDAKNSSKFFKCVGSLQNIESSDSSKNGRSLYQALTVEEYETRELKKPAIGKEYFNHMNLEAIVTNYPYRKNLAKEDIVKESQIRLALIDFLKGLVELDPSKRWSPVQASKHPFVTGEPFTHPYKPPPETPQMPVVQNIKVDNHPGGGHWFAAGLSPNVQGKSRASLYSSPHFQMVQHQPTNSYGSVGSHGSYNDSIGLGSSYGSYGESTNMFAYYSPIGPSGMNMHNQGSISMLGNSPDARRRVKYQPGNGLGISPSAGNFAPLPLGASPSQFTPPSSYSQVSVVSPGHFGPTSPARGTSHGSPLGKTAAVSQFNRRKNWGHSGSPQAQETAFSSHWQSQYPDSTSHTEGTSQPLGNSPSYLQSNCIPVNRKQRGSGGLSANQNISCLIKPGANLNSQTELVHDNAETGISLPDPGDWDPNYSDELLLQEDGSDESCLANEFGRSMNLGSTETWAGFGRFNHVSSSNTPIIMQRLNGPNQSFTNVEMGSLPTHDLQAAYVPSLSKQFHLMPHILHNSPSRFGHQSVQRYTHGRPPQGADWNQIKIQAPSGFGSVGPRSPRSNSFTNSMTWGRRMDPPVSSMPPTSRTRKDYARID 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03352 946 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Viun3g03352 946 ProSiteProfiles Protein kinase domain profile. 122 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03352 946 MobiDBLite consensus disorder prediction 906 924 - -
Viun3g03352 946 Gene3D Phosphorylase Kinase; domain 1 87 202 - -
Viun3g03352 946 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Viun3g03352 946 Pfam Protein kinase domain 123 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03352 946 MobiDBLite consensus disorder prediction 622 639 - -
Viun3g03352 946 FunFam Dual specificity tyrosine-phosphorylation-regulated kinase 1A 85 201 - -
Viun3g03352 946 MobiDBLite consensus disorder prediction 580 603 - -
Viun3g03352 946 MobiDBLite consensus disorder prediction 617 729 - -
Viun3g03352 946 CDD PKc_YAK1 122 465 - -
Viun3g03352 946 SMART serkin_6 122 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03352 946 PANTHER DUAL SPECIFICITY PROTEIN KINASE 13 468 - -
Viun3g03352 946 MobiDBLite consensus disorder prediction 647 729 - -
Viun3g03352 946 MobiDBLite consensus disorder prediction 901 946 - -
Viun3g03352 946 SUPERFAMILY Protein kinase-like (PK-like) 118 488 IPR011009 -
Viun3g03352 946 Gene3D Transferase(Phosphotransferase) domain 1 203 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03352 Viun-Chr3 40575968 40601550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03352 118 351 MAP Kinase Gene Family AT3G18040 34.694 5.64e-32 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-YAK Viun3g03352 Pkinase 5.8e-51 CL0016