Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03350 ATGTCCCAAGTTAGAGATTCTGCAATAAAGCTTTTTGGAGCAGATATTCATACTACACATTCTCCCATTAAGCCAACCACACCCTTCTCAGATTTACACTCATTGACTCAGATTCAGCCTCTGCCTCAACCCATCATCGTCATGAATGGACTTGAAGAATCAACTAATGATGAAGTGGATGTTCCTTTGAATGAAGAAGTTTCTAGCAAACAGAAACTGGTGGGCAAAGTAGTTCATAGGACTAATGAGCACAAAAATGGTAAAAGAAATATTGATCAAGAAAAAGTTTTCAAGAAGCCAGACAAGGTCCTGCAATGTCCTCGCTGCAATAGTTTGGAAACAAAGTTTTGCTACTTCAACAATTACAATGTTAACCAACCTAGACATTTCTGTAAAAATTGCCAAAGGTATTGGACAGCTGGAGGGGCCATTAGAAATGTTCCTGTTGGGGCTGGTAAGCGTAAGAATAAGCACACACCTCTGCAGTATTATCAGAAACCTGTGACTCCTGATGGTGCATCTACGATGCAAACACATTCCAGTGCTTCTAGTGATGATATGATTCTCTCATCTAATGAACTTTCTGTAACTTCAAGATCTATCAGAGAAAGGGAGGAAAATCCTCTTAGTGAATCCTTAGAAACTGTGCTGAGTCTCAATGGCCAAAGAAAATTTGATGTGGACCTTTCCACTGTCAAAGATGATGGTGAGGACCCTTCAAGCTCCTCTATGAGATCTAATGAAATGGAGGCACAACACTTTGATGGTTTAATTCCCTTGCATTCATTTCATTATCATCATGTCCCTTCATGGTCTTATCAATGGAATCCATGTTGGAATGTCAAGGAGTTTAGGTCCAGTAACACTAGTTACACAGGTTCTCCAACCATGATACCAGTTTCTGGCTTCTCAATACCAACAGTAATGTCACCTGCAGCACCTTATTCTTATTCAGGTTTCATCTCAAACTTAGGTGGCCAAGAGGCAGAGTCTTCAATGATTGGATCTGCATTTAGTGGTATCTCATTGTCTTCATCTTCTGTCAGTAACAGTACTAGTTCTGGTAATAGATCTCCAACTTTGGGAAAACATTCTAGAGACGGAAGCACACAGAAGGAAGCTGCAATGAAACAGAACCTTTGGGTGCCTAAGACTGTTAGAATTAACTGTCCAGAAGAGGCTGCAAACAGTTCTATATGGACAACTTTAGGAACAAAATCTGAACAGAACAAAATCATTATAAAAGGAAGTGTTTTTAAATCATTTGAGTCCAAGACAAGTGCTGATGATAATCAAATTCGAAGGACAAACCCTGCTGCTTTCTCACGCTCTGAATCTTTTCAGGAAAGCATGTGA 1356 0.3975 MSQVRDSAIKLFGADIHTTHSPIKPTTPFSDLHSLTQIQPLPQPIIVMNGLEESTNDEVDVPLNEEVSSKQKLVGKVVHRTNEHKNGKRNIDQEKVFKKPDKVLQCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGAIRNVPVGAGKRKNKHTPLQYYQKPVTPDGASTMQTHSSASSDDMILSSNELSVTSRSIREREENPLSESLETVLSLNGQRKFDVDLSTVKDDGEDPSSSSMRSNEMEAQHFDGLIPLHSFHYHHVPSWSYQWNPCWNVKEFRSSNTSYTGSPTMIPVSGFSIPTVMSPAAPYSYSGFISNLGGQEAESSMIGSAFSGISLSSSSVSNSTSSGNRSPTLGKHSRDGSTQKEAAMKQNLWVPKTVRINCPEEAANSSIWTTLGTKSEQNKIIIKGSVFKSFESKTSADDNQIRRTNPAAFSRSESFQESM 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03350 451 ProSiteProfiles Zinc finger Dof-type profile. 104 158 IPR003851 GO:0003677|GO:0006355
Viun3g03350 451 MobiDBLite consensus disorder prediction 164 189 - -
Viun3g03350 451 MobiDBLite consensus disorder prediction 348 365 - -
Viun3g03350 451 MobiDBLite consensus disorder prediction 425 451 - -
Viun3g03350 451 ProSitePatterns Zinc finger Dof-type signature. 106 142 IPR003851 GO:0003677|GO:0006355
Viun3g03350 451 MobiDBLite consensus disorder prediction 168 189 - -
Viun3g03350 451 MobiDBLite consensus disorder prediction 348 377 - -
Viun3g03350 451 Pfam Dof domain, zinc finger 101 158 IPR003851 GO:0003677|GO:0006355
Viun3g03350 451 PANTHER CYCLIC DOF FACTOR 2 1 450 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03350 Viun-Chr3 40541276 40544278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03350 80 450 C2C2-Dof Transcription Factor Family AT5G39660 38.636 6.54e-58 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun3g03350 zf-Dof 3.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03350 - - vun:114177215 888.641