Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03331 ATGGGTAATGAGGAACCTGTGTTCGACGGCAAAGTGGGAAGCATATTAGTCGCCATGGGCTCAGCCAGTTTCATCATCACAGTTTTCCATCTCATTGTCCTTTGTCGCGCTCATCATCGTGCTCGTGTCACCAACCAGAATCCACAACAACAACAACCACGCAGCGTTAACGTTTCGGTGCCGCCACACCTCATTCCGATTCACACGTACCGAAAGAAGAAGAAAAGCGTTGATGAGGTGGCGGCGGAGGGCGACGACGACGAAGATCACACGTGCGCCGTGTGCTTGGGAGAGTTCGAAGACGGTGAAGAGTTGAGGACGCTGCCGGAGTGCTTGCACTCTTTCCACGTCGCCTGCATTGATCCGTGGCTCTCTTCCCGCTCCAGTTGCCCCGTTTGCCGCGCTCATGCCACGCCCTCGCCGGCGGTGGAGCACCCTGCGCCGGAGTTCAGTGCGCATCACATCATAGATATAGATATCACGCAAATTGTTCGCTTTCAAAATGGTTCAGCGCTACTCTGA 522 0.5479 MGNEEPVFDGKVGSILVAMGSASFIITVFHLIVLCRAHHRARVTNQNPQQQQPRSVNVSVPPHLIPIHTYRKKKKSVDEVAAEGDDDEDHTCAVCLGEFEDGEELRTLPECLHSFHVACIDPWLSSRSSCPVCRAHATPSPAVEHPAPEFSAHHIIDIDITQIVRFQNGSALL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03331 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 141 IPR013083 -
Viun3g03331 173 CDD RING-H2_EL5-like 92 134 - -
Viun3g03331 173 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Viun3g03331 173 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 14 138 IPR044675 -
Viun3g03331 173 SMART ring_2 92 133 IPR001841 -
Viun3g03331 173 Pfam Ring finger domain 91 134 IPR001841 -
Viun3g03331 173 SUPERFAMILY RING/U-box 83 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03331 Viun-Chr3 40459338 40459859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03331 15 139 C3H Transcription Factor Family AT2G17450 38.400 5.44e-21 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03331 - - vra:106765957 283.878