Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03328 ATGGGTCTCTGTTTCTCCGGTTCATCATACGATCACGGCAGCAAGGCGGAGTTATCTCGTCCTCTTCCTTTTTCCGGTGGCCAAATTCCGAAATGGCCTGAATTGAACGTATTCAGTTTTGAGGAGCTCAAATCTGCTACAAGTAATTTCAGGTCCGACAGTTTGGTCGGTGAAGGTGGGTTTGGCAGAATTTACAAGGGATGGTTGGATGAAAACACCCTCACCCCCGCCAAACCAGGCTCTGGAGTGGCAGTTGCCATCAAAATGTTAAACCCGGGAAGTCTTCAAGGGTTTCATGAGTGGCAGTCTGAGGTAAACATTTTAGGAAGGCTTTCTCACCCGAACTTGGTGAGGTTATTGGGTTACTGTTGGGACGAGAATCAGTTTCTTCTCGTGTATGAGTTCATGCCAAAGGGAAGCTTAGACCGTCATCTATACAAAAGAGATCATAGGACGGAACCACTTTCTTGGAACACCCGGCTTAAAATAGCTATCGGTGCAGCTCGGGGATTAGTTTTCTTGCACGCTAACGAAAATAATGTCATATTCAGAGATTTCAAGACCTCAAATATACTTCTAGATGGGAATTACAATGCAAAGATATCAGATTTTGGCTTGGCTAAAGTGTGGCCTCCTGAGAAACAATTACATGTAACTACCACGGTCGTCGGCACCCCTGGTTATCTCGATCCAGAATATTTCTTAACAGGCCTCGTGGATGGGAAGAGTGATGTGTATGGATTTGGTGTAGTGCTTCTTCAAATATTCACAGGCATGACTGCAATTTGGCCAACAGGGGAGAGCCTGGTACTATGGGCCAAGCCTTATCTCTCTTCCACAGAAAAGTTGAAAAGCATAATAGATGGTGGAATGGAGGGTCAATATTCAGAAAACGAAGCATTAGAAGCAGCACAACTTATTCTAAAATGCATAGACGATGACCCTAAACAACGTCCATCAATGAGACAAGTACTTGAGGGATTAGAAGTCATTGAAACCATCCATGAAAATTTTATATGA 1020 0.4392 MGLCFSGSSYDHGSKAELSRPLPFSGGQIPKWPELNVFSFEELKSATSNFRSDSLVGEGGFGRIYKGWLDENTLTPAKPGSGVAVAIKMLNPGSLQGFHEWQSEVNILGRLSHPNLVRLLGYCWDENQFLLVYEFMPKGSLDRHLYKRDHRTEPLSWNTRLKIAIGAARGLVFLHANENNVIFRDFKTSNILLDGNYNAKISDFGLAKVWPPEKQLHVTTTVVGTPGYLDPEYFLTGLVDGKSDVYGFGVVLLQIFTGMTAIWPTGESLVLWAKPYLSSTEKLKSIIDGGMEGQYSENEALEAAQLILKCIDDDPKQRPSMRQVLEGLEVIETIHENFI 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03328 339 PANTHER OS01G0588500 PROTEIN-RELATED 32 331 - -
Viun3g03328 339 ProSiteProfiles Protein kinase domain profile. 50 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03328 339 Gene3D Transferase(Phosphotransferase) domain 1 136 338 - -
Viun3g03328 339 CDD STKc_IRAK 56 329 - -
Viun3g03328 339 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 136 337 - -
Viun3g03328 339 Gene3D Phosphorylase Kinase; domain 1 35 135 - -
Viun3g03328 339 ProSitePatterns Protein kinases ATP-binding region signature. 56 88 IPR017441 GO:0005524
Viun3g03328 339 FunFam Serine/threonine-protein kinase BIK1 23 135 - -
Viun3g03328 339 SUPERFAMILY Protein kinase-like (PK-like) 25 328 IPR011009 -
Viun3g03328 339 Pfam Protein tyrosine and serine/threonine kinase 54 327 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03328 Viun-Chr3 40437627 40439729 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03328 26 336 Receptor kinase-like Gene Family AT4G02010 44.025 3.91e-84 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun3g03328 PK_Tyr_Ser-Thr 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03328 - - vun:114176729 453.751