Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03327 ATGGGTTCATCATACGATCACGGCAGCAAGGCGGAGTTATCTCGTCCTCTTCCTTTTTCCGGTGGCCAAATTCCGAAATGGCCTGAATTGAACGTATTCAGTTTTGAGGAGCTCAAATCTGCTACAAGTAATTTCAGGTCCGACAGTTTGGTCGGTGAAGGTGGGTTTGGCAGAATTTACAAGGGATGGTTGGATGAAAACACCCTCACCCCCGCCAAACCAGGCTCTGGAGTGGCAGTTGCCATCAAAATGTTAAACCCGGGAAGTCTTCAAGGGTTTCATGAGTGGCAGTCTGAGGTAAACATTTTAGGAAGGCTTTCTCACCCGAACTTGGTGAGGTTATTGGGTTACTGTTGGGACGAGAATCAGTTTCTTCTCGTGTATGAGTTCATGCCAAAGGGAAGCTTAGACCGTCATCTATACAAAAGAGATCATAGGACGGAACCACTTTCTTGGAACACCCGGCTTAAAATAGCTATCGGTGCAGCTCGGGGATTAGTTTTCTTGCACGCTAACGAAAATAATGTCATATTCAGAGATTTCAAGACCTCAAATATACTTCTAGATGGGAATTACAATGCAAAGATATCAGATTTTGGCTTGGCTAAAGTGTGGCCTCCTGAGAAACAATTACATGTAACTACCACGGTCGTCGGCACCCCTGGTTATCTCGATCCAGAATATTTCTTAACAGGCCTCGTGGATGGGAAGAGTGATGTGTATGGATTTGGTGTAGTGCTTCTTCAAATATTCACAGGCATGACTGCAATTTGGCCAACAGGGGAGAGCCTGGTACTATGGGCCAAGCCTTATCTCTCTTCCACAGAAAAGTTGAAAAGCATAATAGATGGTGGAATGGAGGGTCAATATTCAGAAAACGAAGCATTAGAAGCAGCACAACTTATTCTAAAATGCATAGACGATGACCCTAAACAACGTCCATCAATGAGACAAGTACTTGAGGGATTAGAAGTCATTGAAACCATCCATGAAAATTTTATATGA 1005 0.4378 MGSSYDHGSKAELSRPLPFSGGQIPKWPELNVFSFEELKSATSNFRSDSLVGEGGFGRIYKGWLDENTLTPAKPGSGVAVAIKMLNPGSLQGFHEWQSEVNILGRLSHPNLVRLLGYCWDENQFLLVYEFMPKGSLDRHLYKRDHRTEPLSWNTRLKIAIGAARGLVFLHANENNVIFRDFKTSNILLDGNYNAKISDFGLAKVWPPEKQLHVTTTVVGTPGYLDPEYFLTGLVDGKSDVYGFGVVLLQIFTGMTAIWPTGESLVLWAKPYLSSTEKLKSIIDGGMEGQYSENEALEAAQLILKCIDDDPKQRPSMRQVLEGLEVIETIHENFI 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03327 334 SUPERFAMILY Protein kinase-like (PK-like) 20 323 IPR011009 -
Viun3g03327 334 Pfam Protein tyrosine and serine/threonine kinase 49 322 IPR001245 GO:0004672|GO:0006468
Viun3g03327 334 PANTHER OS01G0588500 PROTEIN-RELATED 27 326 - -
Viun3g03327 334 Gene3D Phosphorylase Kinase; domain 1 30 130 - -
Viun3g03327 334 CDD STKc_IRAK 51 324 - -
Viun3g03327 334 Gene3D Transferase(Phosphotransferase) domain 1 131 333 - -
Viun3g03327 334 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 131 332 - -
Viun3g03327 334 ProSiteProfiles Protein kinase domain profile. 45 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03327 334 FunFam Serine/threonine-protein kinase BIK1 18 130 - -
Viun3g03327 334 ProSitePatterns Protein kinases ATP-binding region signature. 51 83 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03327 Viun-Chr3 40437627 40439730 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03327 21 331 Receptor kinase-like Gene Family AT4G02010 44.025 2.48e-84 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun3g03327 PK_Tyr_Ser-Thr 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03327 - - vun:114176729 452.595