Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03316 ATGGACTCCAACACTCTCGTTTCATGGCCCAGGATGTCAGAAAACATCGAGGCTTTTCCTCTCTCACCCAACAAATCCGAAGAGGTTCATGTTTTAGCAGTTGATGACAGCCTCGTTGATCGCAAAGTCATCGAACGCTTGCTCAAAGTCTTAGCTTGCAAAGTTACTGCTGTGGATAGTGGGCTCAGAGCACTGCAATTGCTTGGACTACTGGATGAGCCGAAAATTCCCTCTGAAACTAATGGTTTTGAAGGTTTAAAGGTGGATCTAATTATCACAGACTACTGCATGCCTGGAATGACAGGTTACGAGTTACTGAAGAAAATCAAGGAATCGTCCACTTTCAAGGAAACTCCAGTGGTGATTATGTCCTCTGAAAACGTTTTGCCACGCATAGACAGATGTTTGGAGGAGGGTGCAGAGGATTTCATAGTTAAGCCAGTGAAGTTATCAGACGTGAAGCGTTTGAAGGATTACATGACAACAAAGGAGGCTAAGGTTGAAGGCCGAGACAGGGAAAGGGAAGGGATCCTCAAAAGGAAGCTCTCGGACACTTCCGATGTGTCATCATCATCACCACCGTCTATTTCCTCATCATCTTCACCCTCAGTGATTGACTCACCAATCAGACGACTTAAAATGACCAGCACTGATTGA 657 0.4521 MDSNTLVSWPRMSENIEAFPLSPNKSEEVHVLAVDDSLVDRKVIERLLKVLACKVTAVDSGLRALQLLGLLDEPKIPSETNGFEGLKVDLIITDYCMPGMTGYELLKKIKESSTFKETPVVIMSSENVLPRIDRCLEEGAEDFIVKPVKLSDVKRLKDYMTTKEAKVEGRDREREGILKRKLSDTSDVSSSSPPSISSSSSPSVIDSPIRRLKMTSTD 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03316 218 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 178 IPR045279 GO:0009736
Viun3g03316 218 CDD REC_typeA_ARR 31 156 - -
Viun3g03316 218 ProSiteProfiles Response regulatory domain profile. 30 161 IPR001789 GO:0000160
Viun3g03316 218 Pfam Response regulator receiver domain 31 153 IPR001789 GO:0000160
Viun3g03316 218 Gene3D - 29 198 - -
Viun3g03316 218 SUPERFAMILY CheY-like 29 156 IPR011006 -
Viun3g03316 218 SMART REC_2 29 160 IPR001789 GO:0000160
Viun3g03316 218 MobiDBLite consensus disorder prediction 167 218 - -
Viun3g03316 218 MobiDBLite consensus disorder prediction 183 218 - -
Viun3g03316 218 MobiDBLite consensus disorder prediction 167 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03316 Viun-Chr3 40276916 40278305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03316 23 210 Response Regulator Gene Family AT1G59940 60.488 6.05e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun3g03316 Response_reg 1.3e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03316 K14492 - gmx:100527828 321.242