Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03315 ATGGACTCCAACACTCTCGTTTCATGGCCCAGGATGTCAGAAAACATCGAGGCTTTTCCTCTCTCACCCAACAAATCCGAAGAGGTTCATGTTTTAGCAGTTGATGACAGCCTCGTTGATCGCAAAGTCATCGAACGCTTGCTCAAAGTCTTAGCTTGCAAAGTTACTGCTGTGGATAGTGGGCTCAGAGCACTGCAATTGCTTGGACTACTGGATGAGCCGAAAATTCCCTCTGAAACTAATGGTTTTGAACAGGGTTTAAAGGTGGATCTAATTATCACAGACTACTGCATGCCTGGAATGACAGGTTACGAGTTACTGAAGAAAATCAAGGAATCGTCCACTTTCAAGGAAACTCCAGTGGTGATTATGTCCTCTGAAAACGTTTTGCCACGCATAGACAGATGTTTGGAGGAGGGTGCAGAGGATTTCATAGTTAAGCCAGTGAAGTTATCAGACGTGAAGCGTTTGAAGGATTACATGACAACAAAGGAGGCTAAGGTTGAAGGCCGAGACAGGGAAAGGGAAGGGATCCTCAAAAGGAAGCTCTCGGACACTTCCGATGTGTCATCATCATCACCACCGTCTATTTCCTCATCATCTTCACCCTCAGTGATTGACTCACCAATCAGACGACTTAAAATGACCAGCACTGATTGA 660 0.453 MDSNTLVSWPRMSENIEAFPLSPNKSEEVHVLAVDDSLVDRKVIERLLKVLACKVTAVDSGLRALQLLGLLDEPKIPSETNGFEQGLKVDLIITDYCMPGMTGYELLKKIKESSTFKETPVVIMSSENVLPRIDRCLEEGAEDFIVKPVKLSDVKRLKDYMTTKEAKVEGRDREREGILKRKLSDTSDVSSSSPPSISSSSSPSVIDSPIRRLKMTSTD 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03315 219 Gene3D - 29 199 - -
Viun3g03315 219 MobiDBLite consensus disorder prediction 168 219 - -
Viun3g03315 219 SUPERFAMILY CheY-like 29 157 IPR011006 -
Viun3g03315 219 ProSiteProfiles Response regulatory domain profile. 30 162 IPR001789 GO:0000160
Viun3g03315 219 MobiDBLite consensus disorder prediction 184 219 - -
Viun3g03315 219 Pfam Response regulator receiver domain 31 154 IPR001789 GO:0000160
Viun3g03315 219 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 179 IPR045279 GO:0009736
Viun3g03315 219 MobiDBLite consensus disorder prediction 168 183 - -
Viun3g03315 219 SMART REC_2 29 161 IPR001789 GO:0000160
Viun3g03315 219 CDD REC_typeA_ARR 31 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03315 Viun-Chr3 40276916 40278305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03315 23 211 Response Regulator Gene Family AT1G59940 60.194 9.44e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun3g03315 Response_reg 1.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03315 K14492 - gmx:100527828 316.62