Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03309 ATGATTGTCACTCGTTCTGCTTTGATGCTTCATCTCCAAAACCCACCAATTCGCTACCATTTCTTCTCCCACTTCCTCAATCCAACCTTCCCTTCTGTATTCAAACCTCGTCCCTTCTCTCTAACCACTCTACGCCAAACACATGCCAGACCCTTTGTTAGTGCTGTTGCATCAGCTTCATCATCACAAGTTTCCAATGGCAGAGACACTTTCTTCGCAGAAGAAAACGTTTCCTGGACTGCACTCGGTCTCTCTGATACTATTTCTAGAGCGCTCTCTGATATTGGCCTCAATAGACCTTCTCTCGTTCAGGCTTCTTCAGTACCGTCTGTGATGTCAGGGAAGGATGTTGTTATTGCCGCGGAGACTGGGAGTGGTAAGACATACAGTTACCTAGTTCCTCTTATTGATAAGCTAAGGGATGCCCAGGAACATTCTCTACATGCTATGTCTGATCAGGAAGGGACCCCGACACAGAAAGTTCTGCTCATCCTTTGTCCGAATGTGCAACTTTGTGAGCAGGTAGTTAGGATGGCCAGCAGTCTACGTAGGGATGATGGTGAGGCGATAGTCAGTGTGGCTGCTATTTGTGGTAGGCAGGGATGGCCAATTCGGGAACCTGATGTCATTGTGACAACACCTGCTGCCCTTCTGAATTATGTTGACCTTGATAGAACCCGCCGCATGCAATTTATGCGTGGTGTTAAATATGTGGTGTTTGATGAAGCCGACATGCTTCTATGTGGGAGCTTCCAGAATAAAGTAATCCGCTTGATAAACTTGCTCCGCTTCGATGAGAAAGTCTTGTCTCGATCAAAAAAATCAGTAGCAGAGTTTTCAATGAAACCTGAATCTTCCTTGTCATCAGAAGATGCTTTTGAAGAAGGTGAAGATGAACTACAAATCGAAGCCACCTTAGAAGAGGATGACACTGATAAAGAGGATGATATTGTTGATATTAATAATGAAGACACATCTGTTAAACAAAGAGACTGGAGGAGAGTGAGAAAAACATATGAGCGTAGTAAACAGTATGTTTTTGTTGCTGCTACACTTCCAGTGAATGGAAAGAAGACAGCTGGAGGGATATTGAAATATATGTTTCCTGATGCTGAGTGGGTTTGTGGGAACTATCTTCATTGCCACAATCCGAGATTGGAACAAAAATGGATAGAAGTTACCGTTGATACTCAAGTGGATGAACTCATAAAGGCTGTGAATCACAGTTTCAGATCTGAAGATTTGGTTAATGCTGGTGGCATTCACAGAACAATGGTGTTTGCGAACACTGTTGAGGCTGTTGAAGCTGTGGCAAAGATATTACTCCGATCTGGAATTGAATGTTCACGCTATCATAAGAATTGCACATTGGAAGAGCGAGCACAGACCTTAGTTGATTTTCATGATAAAGGTGGTGTTCTTGTATGTACTGATGCTGCTGCTCGTGGTGTTGATATTCCAAATGTTTTACATGTTATTCAGGCGGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGGTTGGTCGTACAGCTAGAGCTGGTCAAATTGGACTTGTTACTAGCATGTACACAGAATCCAACAGGGAACTTGTCGATGCAGTTCGTTGGGCTGAGAAACGTGGTCAACCTGTGGAAACTGCATTTAGCAGGAAAAGAAGCTTCCGCAACAAGCTCAAGAAGAGGGGTACTAACAAAGTCAGAGATTCAACAACTAATAAAGAGAGAGTACTAGCATGA 1740 0.4333 MIVTRSALMLHLQNPPIRYHFFSHFLNPTFPSVFKPRPFSLTTLRQTHARPFVSAVASASSSQVSNGRDTFFAEENVSWTALGLSDTISRALSDIGLNRPSLVQASSVPSVMSGKDVVIAAETGSGKTYSYLVPLIDKLRDAQEHSLHAMSDQEGTPTQKVLLILCPNVQLCEQVVRMASSLRRDDGEAIVSVAAICGRQGWPIREPDVIVTTPAALLNYVDLDRTRRMQFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKVLSRSKKSVAEFSMKPESSLSSEDAFEEGEDELQIEATLEEDDTDKEDDIVDINNEDTSVKQRDWRRVRKTYERSKQYVFVAATLPVNGKKTAGGILKYMFPDAEWVCGNYLHCHNPRLEQKWIEVTVDTQVDELIKAVNHSFRSEDLVNAGGIHRTMVFANTVEAVEAVAKILLRSGIECSRYHKNCTLEERAQTLVDFHDKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQIGLVTSMYTESNRELVDAVRWAEKRGQPVETAFSRKRSFRNKLKKRGTNKVRDSTTNKERVLA 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03309 579 CDD DEADc 88 269 - -
Viun3g03309 579 MobiDBLite consensus disorder prediction 560 579 - -
Viun3g03309 579 CDD SF2_C_DEAD 386 524 - -
Viun3g03309 579 Gene3D - 53 367 IPR027417 -
Viun3g03309 579 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 398 563 IPR001650 -
Viun3g03309 579 SMART ultradead3 96 389 IPR014001 -
Viun3g03309 579 Pfam DEAD/DEAH box helicase 103 267 IPR011545 GO:0003676|GO:0005524
Viun3g03309 579 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 77 105 IPR014014 GO:0003724
Viun3g03309 579 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 108 370 IPR014001 -
Viun3g03309 579 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 88 552 - -
Viun3g03309 579 SMART helicmild6 435 515 IPR001650 -
Viun3g03309 579 Pfam Helicase conserved C-terminal domain 422 515 IPR001650 -
Viun3g03309 579 Gene3D - 387 578 IPR027417 -
Viun3g03309 579 MobiDBLite consensus disorder prediction 564 579 - -
Viun3g03309 579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 527 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03309 Viun-Chr3 40104540 40110606 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03309 329 536 Eukaryotic Initiation Factors Gene Family AT5G11200 25.523 9.34e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03309 - - gmx:100789323 973