Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03278 ATGAGTTGGTTTGATTCTCAAATCTGCGATGGCAGTGATGCTATGAGCAACCCCACTAGTATTTCTCCATCTTCTTGTTCTTCTTCTGCACCATTGTCTTACACTTCTGAGTACAAGAAACAACTTCCCCCTCCTCTGTCTTCTTCATCTGGCACCAGAATAAGCCCTGCAATTGTTTTCATCATTGTCATTCTAGCTATTGTGTTTTTCATCTCTGGTCTCCTTCACTTGCTGGTTCGATTCCTCATAAGGCACATGTCCTCTTCGTCAATTTCCCAGTCCAATAGGTACCCTGACATGTCGGAATCTGACCCTTACCAGAGACAGTTACAGCAGCTGTTTCATCTCCATGATTCAGGCCTAGATCAGGCCTTCATAGATGCTCTCCCAGTTTTCCTATACAAAGACATAATAGGTTTGAAGGAGCCTTTTGATTGTGCAGTGTGTCTTTGCCAGTTCTCAGAACAAGACATGCTGAGGTTGCTGCCTCTTTGCAACCATGCTTTTCACATTGATTGCATAGATACATGGCTGCTCTCAAATTCAACTTGCCCTCTCTGCCGAGGGAGTCTTTATGATGAGGCAGGCTTTGAAAACCCAGTTTATGACTTTGAGGGTCTGAGGGAGGAAGATGGGGTTTCAGGCAGTGTTGCTGCAGAGACTGGTTCCTTCAACAAACATGCAGAAAATCACATAATGAGTGGGAAAAGGGTGTTTTCTGTGAGGCTTGGGAAGTTTAGAAGCTCAAATAATGGAGAAGGGGGTGAGAGCAGTACCAGTAACTTGGATGTTAGGAGATGCTATTCAATGGGGTCCTTCCAATATGTTGTTGCTGATTCAGATTTGCAAGTGGCTTTGTGCCCCAATAGTGGTTGCAGTGTGAGACAATTCAAAGGTAGATTGGACCATTGTGGGAATTCTTCCACTGAAGGTGATGTTGAAGGCAAAAAAATCAACATTGCAAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAGGACAAGGTATCAAATTCACCACAAAACCATTTGGGTGGTTCTTTTGTCCCTGCAGCTTTGCCATGGATGAATAGAGCTCAAGGTACATGA 1104 0.4402 MSWFDSQICDGSDAMSNPTSISPSSCSSSAPLSYTSEYKKQLPPPLSSSSGTRISPAIVFIIVILAIVFFISGLLHLLVRFLIRHMSSSSISQSNRYPDMSESDPYQRQLQQLFHLHDSGLDQAFIDALPVFLYKDIIGLKEPFDCAVCLCQFSEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYDEAGFENPVYDFEGLREEDGVSGSVAAETGSFNKHAENHIMSGKRVFSVRLGKFRSSNNGEGGESSTSNLDVRRCYSMGSFQYVVADSDLQVALCPNSGCSVRQFKGRLDHCGNSSTEGDVEGKKINIARKGESFSVSKIWQWSRKDKVSNSPQNHLGGSFVPAALPWMNRAQGT 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03278 367 FunFam RING-H2 finger protein ATL46 108 193 - -
Viun3g03278 367 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Viun3g03278 367 SMART ring_2 146 187 IPR001841 -
Viun3g03278 367 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 49 333 - -
Viun3g03278 367 CDD RING-H2_EL5-like 145 188 - -
Viun3g03278 367 SUPERFAMILY RING/U-box 125 195 - -
Viun3g03278 367 Pfam Ring finger domain 145 188 IPR001841 -
Viun3g03278 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 193 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03278 Viun-Chr3 39792956 39794817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03278 48 340 C3H Transcription Factor Family AT2G18650 39.528 1.86e-53 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03278 - - gmx:100818135 542.347