Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03271 ATGGCTTCAAGATCTTATGCTAATCTGTTAGGCTTGGCGAATGGGGACTGGCTTGATATTCCTCACACTCCAAGAGCTCTTCCAAGGGTTATGACGGTTCCTGGAATTATTTCTGATCTGGATGGTTATGGTTGTAATGATGGTGATTCAGATGTTAGCTCTTCTGGGTGTAGGGAGCGGAAAATCATTGTGGCAAACATGTTGCCATTGCAGGCTAAAAGAGATATAGAAACTGCTAAATGGGTTTTTAGTTGGGATGAGGATTCAATTTTATTACAATTAAAAGATGGTTTTTCTTCTGATACTGAAGTAATCTACGTGGGTTCTCTCAAGGTCGAAATAGATCTCTGTGAGCAGGATGCAGTTGCTCAGAGATTGCTGGATGAATTTAATTGTGTACCTACTTTCCTTCCCCATGATCTCCAGAAGAAGTTCTACCTTGGCTTCTGTAAGCAGCAACTTTGGCCTCTCTTTCATTATATGTTACCCATATGCCCAGATCATGGTGATCGCTTTGACAGAATACTTTGGCAGGCCTATGTTTCTGCAAACAAAATATTTGCAGACAAGGTCATGGAAGTAATTAATCCTGATGATGATTTTGTTTGGGTTCATGACTATCACTTAATGGTTTTGCCTACTTTCTTGAGGAAGCGATATAATCGGGTGAAGCTTGGATTCTTTCTGCATAGTCCTTTCCCTTCTTCTGAAATATACCGAACTTTACCTGTTAGGGATGAAATTTTGCGGGGATTGTTGAACTCTGATTTGATTGGCTTTCATACATTTGATTATGCTCGCCACTTTCTTTCTTGCTGCAGTAGAATGCTAGGTCTGGACTATGAATCTAAGCGAGGACATATAGGGCTTGATTACTTTGGTCGCACTATTTTTATTAAAATTTTACCTGTAGGCATTCACATGGGTAGACTTGAATCTGTATTAAATCTTTCTTCTACATCTTCTAAACTGAAAGAGGTTCAGGAAGAGTTTAAGGGTAAGAAAGTAATTCTTGGTGTTGATGACATGGATATTTTTAAGGGCATTAGTCTGAAACTTCTAGCCGTTGAACATCTGCTGCAGCAGAATTCAGATTTGCAGGGCAAAGTTGTCCTAGTTCAAATTGTAAATCCTGCAAGGGGCTTAGGGAAGGATGTTCAAGAAGCAAAGAATGAAACATATTTAATTGCCAGGAGGATTAATGATACATATAGCAAAAATAATTATCAGCCAGTCATTCTCATTGACCGACATGTTCCTCGCTTTGAGAAGAGTGCATATTATGCTGTAGCAGAATGTTGCATTGTCAATGCTGTAAGGGATGGTATGAACTTAGTTCCATACAAATACATAGTCTGTAGACAGGGAACTGCACGACTGGATGAATCCTTGGGTAGAAAAAGTGATTCTCCTCGGACAAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCACCTTCTCTTAGTGGAGCAATAAGGGTCAATCCCTGGGACATAGATGCCGTGGCCGATGCTATGTATGCTGCCGTTACTATGAGTGATTCAGAGAAGCAGTTGCGCCATGAGAAGCACTATAGGTATGTCAGTTCTCATGATGTGGCATATTGGGCACATAGCTTTATGCAGGATCTGGAGAGAGCCTGCAAAGATCATTACACCAAAAGATGCTGGGGATTTGGTTTGGGCTTGGGGTTCAGAGTTGTTTCTCTCTCTCATGGTTTTAGGAAGTTGACGATTGACCATGTTGTTTCAGCATACAAGAGAACCAATAGAAGGGCCATCTTTCTTGATTATGATGGTACTGTTGTATCACAATCTTCCATAAGTAAAGTCCCCAGCCCTGAAGTCATCTCCGTCTTAAATGCTCTCTGTAATGATCCCAAGAATATAGTGTTCATTGTCAGTGGGAGGGGAAGGGATTCACTGAGTGAATGGTTTACTTCATGCCAAATGCTGGGACTTGCAGCAGAACATGGATACTTTTTACGGTGGAACAAAGATTCAGAATGGGAATCAAGTCACTTGTCTGCAGACCTGGATTGGAAAAAGATAGTGGAACCTGTCATGCAATTGTATACAGAAGCAACTGATGGTTCTAATATTGAAATTAAGGAAAGTGCTTTGGTGTGGCATCATCAAGATGCAGACCCTGATTTTGGTTCTTGCCAAGCCAAAGAGTTGTTGAGTCACTTGGAAAGTGTGCTTGCTAATGAACCAGCAGTTGTTACGAGAGGCCAGCATATTGTTGAAGTTAAGCCACAGGGAATAAGCAAGGGTTGGGTAGCTGAAGAGGTTATTCAGACCATGGTGAACGGCGGTAATCCACCAGATTTTGTACTGTGCATAGGGGATGATAGGTCTGACGAGGACATGTTTGAGACCATTTTGAGGACGGTATCACTGCCATCAGCTCCAGAGATCTTTGCCTGTACTGTAGGTAGGAAGCCTAGCAAGGCCAAGTATTTTCTTGATGATACTAGTGATGTGGTGAAGTTGCTTCAAAGCCTTGCTGCTTCATCCAATCCAAAACCCAGGCATCTTGCTCACTTTCAGGTCTCCTTTGAGAGCACAATTTGA 2577 0.4164 MASRSYANLLGLANGDWLDIPHTPRALPRVMTVPGIISDLDGYGCNDGDSDVSSSGCRERKIIVANMLPLQAKRDIETAKWVFSWDEDSILLQLKDGFSSDTEVIYVGSLKVEIDLCEQDAVAQRLLDEFNCVPTFLPHDLQKKFYLGFCKQQLWPLFHYMLPICPDHGDRFDRILWQAYVSANKIFADKVMEVINPDDDFVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNSDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLESVLNLSSTSSKLKEVQEEFKGKKVILGVDDMDIFKGISLKLLAVEHLLQQNSDLQGKVVLVQIVNPARGLGKDVQEAKNETYLIARRINDTYSKNNYQPVILIDRHVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTARLDESLGRKSDSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADAMYAAVTMSDSEKQLRHEKHYRYVSSHDVAYWAHSFMQDLERACKDHYTKRCWGFGLGLGFRVVSLSHGFRKLTIDHVVSAYKRTNRRAIFLDYDGTVVSQSSISKVPSPEVISVLNALCNDPKNIVFIVSGRGRDSLSEWFTSCQMLGLAAEHGYFLRWNKDSEWESSHLSADLDWKKIVEPVMQLYTEATDGSNIEIKESALVWHHQDADPDFGSCQAKELLSHLESVLANEPAVVTRGQHIVEVKPQGISKGWVAEEVIQTMVNGGNPPDFVLCIGDDRSDEDMFETILRTVSLPSAPEIFACTVGRKPSKAKYFLDDTSDVVKLLQSLAASSNPKPRHLAHFQVSFESTI 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03271 858 CDD GT20_TPS 60 545 IPR001830 GO:0003824|GO:0005992
Viun3g03271 858 Gene3D Glycogen Phosphorylase B; 313 529 - -
Viun3g03271 858 SUPERFAMILY HAD-like 592 837 IPR036412 -
Viun3g03271 858 Gene3D Glycogen Phosphorylase B; 54 312 - -
Viun3g03271 858 FunFam Trehalose-6-phosphate synthase 2 675 754 - -
Viun3g03271 858 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 591 708 - -
Viun3g03271 858 FunFam Alpha,alpha-trehalose-phosphate synthase 314 529 - -
Viun3g03271 858 NCBIfam trehalose-phosphatase 590 837 IPR003337 GO:0003824|GO:0005992
Viun3g03271 858 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 28 837 IPR001830 GO:0003824|GO:0005992
Viun3g03271 858 CDD HAD_TPP 593 831 - -
Viun3g03271 858 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Viun3g03271 858 Pfam Trehalose-phosphatase 595 827 IPR003337 GO:0003824|GO:0005992
Viun3g03271 858 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 721 849 - -
Viun3g03271 858 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 549 - -
Viun3g03271 858 NCBIfam HAD-IIB family hydrolase 593 794 IPR006379 -
Viun3g03271 858 Gene3D - 721 850 IPR023214 -
Viun3g03271 858 Gene3D - 591 709 IPR023214 -
Viun3g03271 858 Pfam Glycosyltransferase family 20 60 545 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03271 Viun-Chr3 39664930 39670051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03271 1 858 Trehalose Biosynthesis Gene Families AT1G60140 73.635 0.0 1359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03271 K16055 - gmx:100775779 1659.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03271 3 39664930 39670051 Viun9g01182 9 10703929 10709738 ECH
Viun3g03271 3 39664930 39670051 Viun3g03271 3 39664930 39670051 ECH
Viun2g01207 2 22795857 22801080 Viun3g03271 3 39664930 39670051 PCT