Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03265 ATGGCTTCCCCACTCAGAATTTCAAGGCTCATCCGCTCCTTTTCTTCGACTTCCTTCTTTTCACGAGGTGGGAGTAGTTACCTTGGGTCGAGACTCTGTAAATACAGCACTGCTGCTGCCATTGAAGAACCCATTAAACCAGCAGTGCAAGTGGAATATACCCAACTCTTAATTGATGGAAAATTCGTAGATGCTGCTTCTGGTAAAACTTTTCCAACTTTAGATCCAAGGACGGGGGAAGTGATTGCTCATGTTGCTGAGGGTCACTCTGAAGATGTTGATCGAGCTGTTGCAGCTGCGCGCAAAGCATTTGATCATGGTCCATGGCCTAAGATGACAGCTTATGAACGGCAAAAGATCTTGTTACGTGCAGCTGATCTGATTGAGAAGCATAATGATGAGATTGCAGCACTTGAGACTTGGGATAATGGAAAGCCTTATGAACAATCTGCTAAGATTGAGATTCCAATGCTTGTTCGTCTGATTCGATACTATGCTGGTTGGGCAGATAAGATTCATGGTCTAACAGTTCCAGCTGATGGACCTTATCATGTTCAAACTTTGCACGAACCCATTGGTGTTGCGGGTCAGATCATTCCTTGGAACTTTCCTCTTCTCATGTTTGCCTGGAAAGTTGGACCAGCATTGGCCTGTGGCAACACCATTGTTCTCAAAACAGCTGAGCAGACACCATTATCTGCTTTATATGCAGCAAAACTATTTCTTGAGGCTGGACTTCCCCCTGGTGTTTTAAATGTGGTGTCAGGATTTGGCCCAACTGCTGGTGCTGCTCTTGCAAGTCACATGGAGGTTGATAAGCTTGCTTTTACTGGTTCCACTGATACTGGGAAAGTTGTCCTTGAATTGGCGGCTAAAAGCAATCTTAAGCCTGTGACTTTGGAGCTTGGCGGAAAATCCCCGTTTATTGTGTGTGAAGACGCTGACATAGATCAGGCTGTTGAGCTAGCACACTTTGCTTTATTCTTTAATCAGGGACAATGTTGCTGTGCTGGGTCACGAACATATGTACACGAAAGTGTATACGAGGAGTTTGTTGAGAAAGCAAAGGCTCGTGCTTTGAAACGTGTTGTTGGTGATCCATTCAAGGGGGGAATAGAGCAAGGTCCTCAGATTGATTCAGACCAATTTGAGAAAATCCTGAGGTATATCAGATATGGTGTTGAAAGTGGGGCTACCCTTGAAACCGGAGGAGACAGACTTGGCAACAAGGGCTTCTATATTCAACCAACAGTCTTCTCAAATGTTAAGGATGACATGCGGATTGCGAAGGAAGAAATCTTTGGTCCAGTCCAATCCATATTAAAATTCAAGGACCTTGGTGAGGTAGTTCAAAGAGCAAATAACACACGTTATGGGCTTGCAGCAGGAGTGTTCACAAAGAACATAGACACTGCCAACATTTTGACTCGGGCACTGAGAGTAGGAACAGTTTGGGTAAATTGCTTTGACACATTTGATGCTGCAATCCCCTTTGGGGGTTACAAGATGAGTGGTCAGGGCAGAGAAAAAGGAGAGTATAGTCTTAAGAACTACTTGCAAGTGAAGGCTGTTGTTAACCCCTTGAAGAACCCAGCATGGCTTTGA 1605 0.4461 MASPLRISRLIRSFSSTSFFSRGGSSYLGSRLCKYSTAAAIEEPIKPAVQVEYTQLLIDGKFVDAASGKTFPTLDPRTGEVIAHVAEGHSEDVDRAVAAARKAFDHGPWPKMTAYERQKILLRAADLIEKHNDEIAALETWDNGKPYEQSAKIEIPMLVRLIRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYAAKLFLEAGLPPGVLNVVSGFGPTAGAALASHMEVDKLAFTGSTDTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADIDQAVELAHFALFFNQGQCCCAGSRTYVHESVYEEFVEKAKARALKRVVGDPFKGGIEQGPQIDSDQFEKILRYIRYGVESGATLETGGDRLGNKGFYIQPTVFSNVKDDMRIAKEEIFGPVQSILKFKDLGEVVQRANNTRYGLAAGVFTKNIDTANILTRALRVGTVWVNCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVNPLKNPAWL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03265 534 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 39 524 - -
Viun3g03265 534 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 68 524 IPR016162 GO:0016491
Viun3g03265 534 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 328 339 IPR016160 GO:0016491
Viun3g03265 534 Pfam Aldehyde dehydrogenase family 62 524 IPR015590 GO:0016491
Viun3g03265 534 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 58 327 - -
Viun3g03265 534 SUPERFAMILY ALDH-like 50 527 IPR016161 GO:0016491
Viun3g03265 534 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 306 495 IPR016163 GO:0016620
Viun3g03265 534 CDD ALDH_F2BC 51 525 - -
Viun3g03265 534 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 300 307 IPR029510 GO:0016491
Viun3g03265 534 FunFam Mitochondrial aldehyde dehydrogenase 2 306 495 - -
Viun3g03265 534 FunFam Aldehyde dehydrogenase, putative 496 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03265 Viun-Chr3 39542977 39546518 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03265 6 534 Aldehyde Dehydrogenase Gene Family AT3G48000 77.903 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03265 K00128 - gmx:100777399 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03265 3 39542977 39546518 Viun3g03265 3 39542977 39546518 ECH
Viun2g01211 2 22871841 22876575 Viun3g03265 3 39542977 39546518 PCT