Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03262 ATGTTATGTGTTTTCTCTTGTTCTATTTCAATGAAATTTCAATTGTTGCTTCTCCTGCTTTCCATCACCCTTTGTCTTGGATCTTCTCAAACTTCTGTTCATAATTGTGTCCTTGATATTCAATCTTCTTCAGCCCTGGTTAGTTCGAACTGCGAATTGTACAATTGGGGAGGGTTTATCAATGGCTGTTGTGGACCATATTTTGGTGATTACCTCTATGCCTTGGGGGTGAGGGCAAACGAAACTGGAAAAGTATTCTTGAATCCCTCAGAGCAGAAAAACTGTACGGCATCAATGGAAGCTTTTGACAACAAATTTACTTGTTCTGGAATGGAGAAGCTAACTAGTGGAACTGGTGGTTGCTCTGATTACACCATCATAGATGTTGTTAATCAGCTTGGAAACAACCTTAGGAGATTGGAGGAAGAATGCATGCCTTTGAGCACAAATGGTAGGCCAAATGAAACTTGCATTGAATGTTTCAAAGCATGGGAGGATATCAGTGCAAAACCAGACACTACAAGAGGGTCAGAATCAGCAAATATCAGTTCTTATCTTTGTAGGTTTGCTGTTCTTGTCTCACTGACAAGCACAAGAATTTATGATGAGGAATCAATTCTAGAAGTTTATAAATGCCTTGGAGATCATGCCCTTTCTGGAGGATTAGCTTCAGGTAATGAAGAAGTGAAGGCTAGTAGAAATGCTAGTATCAACTCAGGTCTCTGGATTGCATTTGGCATAACAGGAATTATAGTATTGGTGGTTCTTGCCGCACTAGCATTATTTGTCACAAGAATGAGAAGTGCTCCATCAGTACAACATGAATCTGATTCACCTTCACTGAAGATAACTTTGAAGGATGTTTATGTAGCAACAGACAATCTCAGTGCTTCAAATTTCATAGGCCAAGGCATAGCCGGGAAAGTGTACAAAGGTGTACTCTCCAACAATCAATCTGTTGCAGTGAAGCATATCACCAATGAATGTTACATGGAGACATTTGTCAGAGAAGTGAGAAGCCTTTCTCATGTTAGGCATCACAACCTAGTAGCTTTACTGGGATACTGTGAAAGTGAATCTGAATGTTTTCTGGTGTATGAGTTATGCCACAATGGAAACCTCTCAGAATGGCTATTCGGCAATGGTAAAGTTCTTTCATGGATTCAAAGACTAGAGATTGCCATTGATAGTGCAAGAGGCCTTGAGTTTCTCCACACCTACCCAAATGGCTGCATCGTTCACCGTGATATAAAGCCATCAAACATTCTTATTGATGCTAACTTCCAAGCAAAGCTTTCAGACTTTGGGTTGTCCAGGGTTATGGAGTTGGGTCAATCCTATGTGAGCTCAGAAGTAAGAGGAACATTTGGTTATATTGATCCTGAATATAGGACAAATCACCATGTAAAAGCCTCAGCAGATGTCTACAGCTTTGGAATAGTGTTGCTGCAACTTCTATCAGGACAAAGGATCCTCAACATTGATTTCCAGAGACCAATGTCTCTGGGTAAAATGGCCAGAGATGTTGTTAGAGGTGGTGATATTTCAGAATTTGCTGATCCTAAACTGAAAGGGGAGTACTCTGTTGAAGCATTTGACATAGTACTAAAGCTAGCTTTGTCTTGCATAGGGCTCAAGCGCCACAGGCCCTCTATAGATGAAGTGTTATATAGCTTAGAAAAGACACTCCATATTTCTTTATAA 1704 0.4026 MLCVFSCSISMKFQLLLLLLSITLCLGSSQTSVHNCVLDIQSSSALVSSNCELYNWGGFINGCCGPYFGDYLYALGVRANETGKVFLNPSEQKNCTASMEAFDNKFTCSGMEKLTSGTGGCSDYTIIDVVNQLGNNLRRLEEECMPLSTNGRPNETCIECFKAWEDISAKPDTTRGSESANISSYLCRFAVLVSLTSTRIYDEESILEVYKCLGDHALSGGLASGNEEVKASRNASINSGLWIAFGITGIIVLVVLAALALFVTRMRSAPSVQHESDSPSLKITLKDVYVATDNLSASNFIGQGIAGKVYKGVLSNNQSVAVKHITNECYMETFVREVRSLSHVRHHNLVALLGYCESESECFLVYELCHNGNLSEWLFGNGKVLSWIQRLEIAIDSARGLEFLHTYPNGCIVHRDIKPSNILIDANFQAKLSDFGLSRVMELGQSYVSSEVRGTFGYIDPEYRTNHHVKASADVYSFGIVLLQLLSGQRILNIDFQRPMSLGKMARDVVRGGDISEFADPKLKGEYSVEAFDIVLKLALSCIGLKRHRPSIDEVLYSLEKTLHISL 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03262 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Viun3g03262 567 ProSiteProfiles Protein kinase domain profile. 295 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03262 567 Gene3D Transferase(Phosphotransferase) domain 1 369 566 - -
Viun3g03262 567 Pfam SPARK 33 170 IPR043891 -
Viun3g03262 567 SUPERFAMILY Protein kinase-like (PK-like) 273 560 IPR011009 -
Viun3g03262 567 SMART serkin_6 295 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03262 567 FunFam probable receptor-like protein kinase At5g59700 369 567 - -
Viun3g03262 567 Gene3D Phosphorylase Kinase; domain 1 260 368 - -
Viun3g03262 567 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 208 561 - -
Viun3g03262 567 FunFam Serine/threonine kinase protein 261 368 - -
Viun3g03262 567 Pfam Protein kinase domain 299 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03262 Viun-Chr3 39508065 39511413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03262 283 565 Receptor kinase-like Gene Family AT1G67720 41.869 3.00e-62 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Viun3g03262 Pkinase 6.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03262 - - gsj:114395768 915.22