Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03252 ATGTCTCTCTGTGCTTCACTCTCCACCACAACTTCGCGCCTCGTTTCCCTTCCATCTTCACTCCCTTCAAGTTCTCCACTTTCTCTCAGATTTTCCTTCACTTTCCGGGGAAACAGAATCCCAGTTAAATCTCAGAAGGAGCCGTTTTCAGCAAGGTATGCAAGAGTGTTGGTAAAGGCTCAGGCTACAGCACCTGCTTCTTCCGAGGCTGTGAAACTCACACCTGTCCCTTCTGAGATGAAGGCATGGGTGTATGGGGAATATGGGGGTGTGGAGGTTCTGAACCTTGACTCCAATGTTGCCGTGCCTGATGTGAAAGAGGATCAGGTCCTTGTCAAAGTTGCTGCTGCTGCTCTTAACCCCGTTGATGCCAAGAGAAGGCAGGGAAAGTTTAAGGCCACTGATTCTCCTCTTCCGACTGTTCCGGGGTATGATGTTGCGGGTGTGGTGGTGAAGGTGGGTAGTGAAGTGAAGGACTTTAAAGTGGGTGATGAAGTGTATGGAAATGTAAGTGAGAAAGCTTTAGACGGGCCAAAGCAATTCGGGTCTTTGGCTGAGTACACAGCGGTTGAGGAGAAACTGTTGGCAGCAAAACCTAAGAACTTGGACTTTTCTCAGGCTGCTTCTCTTCCTCTAGCAATTGAGACTGCTTATGAGGGTTTGGAGAGGACTGGTTTTTCTCCTGGTAAATCTATTCTTGTTCTCAATGGTTCTGGAGGAGTTGGAAGCCTAGCCATTCAGCTAGCTAAGCAAGTCTTTGGAGCTTCAAGAGTAGCTGCCACTTCTAGCACTAGAAATTTGGAGCTATTGAAAAGCTTGGGAGCTGATTTGGCTATTGACTACACCAAAGAAAACTTCGAAGATTTGTCAGAAAAGTTTGATGTAGTCTTTGATGCCATAGGGCAATGTGAGAGGGCAGTGAAGGCTGTGAAAGAAGATGGTGGTGTGGTGGCATTGACGGGTGCTGTTACCCCACCTGGTTTCAGATTTGTGGTTACTTCGAATGGAAGTGTTCTTAGGAAACTGAACCCTTACTTAGAAAGTGGAAAGGTGAAGGCCATTGTAGACCCCAAAGGTCCATTCTCCTTTGCTCAGCTTGCTGAAGCTTTCTCTTATCTTGAAACCAATCGAGCCACTGGAAAGGTTGTTATACACCCCATCCCCTGA 1167 0.4722 MSLCASLSTTTSRLVSLPSSLPSSSPLSLRFSFTFRGNRIPVKSQKEPFSARYARVLVKAQATAPASSEAVKLTPVPSEMKAWVYGEYGGVEVLNLDSNVAVPDVKEDQVLVKVAAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSEVKDFKVGDEVYGNVSEKALDGPKQFGSLAEYTAVEEKLLAAKPKNLDFSQAASLPLAIETAYEGLERTGFSPGKSILVLNGSGGVGSLAIQLAKQVFGASRVAATSSTRNLELLKSLGADLAIDYTKENFEDLSEKFDVVFDAIGQCERAVKAVKEDGGVVALTGAVTPPGFRFVVTSNGSVLRKLNPYLESGKVKAIVDPKGPFSFAQLAEAFSYLETNRATGKVVIHPIP 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03252 388 Gene3D - 87 384 - -
Viun3g03252 388 Gene3D - 221 335 - -
Viun3g03252 388 Pfam Zinc-binding dehydrogenase 273 384 - -
Viun3g03252 388 Pfam Alcohol dehydrogenase GroES-like domain 108 170 IPR013154 -
Viun3g03252 388 SUPERFAMILY GroES-like 77 234 IPR011032 -
Viun3g03252 388 CDD MDR_like_2 80 384 - -
Viun3g03252 388 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 229 250 IPR002364 GO:0008270|GO:0016491
Viun3g03252 388 SMART PKS_ER_names_mod 89 384 IPR020843 GO:0016491
Viun3g03252 388 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 71 388 IPR044626 GO:0016628
Viun3g03252 388 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 202 324 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03252 Viun-Chr3 39363119 39364757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03252 135 298 Monolignol Biosynthesis Gene Families AT1G72680 30.570 5.85e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03252 K18980 - gmx:100810816 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03252 3 39363119 39364757 Viun3g03252 3 39363119 39364757 ECH