Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03249 ATGGGTACAGAACAAACCGAAGTGGGCGATGGTTCTTCTTCTCCATCACCTAAGAAAGATAAAAAGAAACAAAAGATTAATCAAGACAATGATTCAGATCCATCAAGAAAGTCTTCCGATTCAGATTCAAATCCTCCGGCTCCGACAGATTCTCCGGCTCCGACAGATTCTCCGGATTCGGATTCTACGGCTTCGAAAGATTCTCCGAATTCGAAAGATTCTCTGGATTCGGATTCGAAAGATTCTCCGGCTTCGAAAGATTCTCCGGATTCGAAAAATTTTCCGACTTCGACAGATTCTTCGGATTCGAAATATTTTCCGACTTCGACAGATTCTTCGGATTCGGATTCTCCGGCTTCAAAAGATTCTCCGACTTCGAAAGATTCTCCGGATTCGAAAGATTCTCCGGGTTCAGATTCTGCGGATTCGGATTCTCCAGAGAGTCGTTCGTCTAAGTCACCACCGTCACCGTCACCGTCACCGTCACCGCCACCTTCAACGTCACCGTCAGCGTCACCGCCACCGTCAACGTCATCGTCACCGTCACCGTCACCGCCACCGTCAACGTCACCGCCACCGTCACCGTCACCGTCACCGCCACCTCCGTCCAAAACTTCATCACAACCAAAACCGTCATCTGAAGATTCAAATCCATCATCACAACCACAGTCATCTAAAGATTCAAGTTCACCTCCGCCACTTCCATCGTTACCGTCGCCTCCACAGCCCTCGTCATCGCTATCGCCATCGCCATCGCCATCGCCATCGCCATCGCCATCTTCACCACCACCACGTTTCCAGCAACCACCTTCGCGCCAATATTCACCGCCACCACCTCCGCGTCCGCGTTCCCCGCCACCCCCTTTGCCCCAACCATCCCCGGCACCTTCCCCGCTACCACCTGGGTCACCGCCATCAAATCGACAGGCAGAGCAAAATGAGAATTCTTCCTCGACACCACCATCAACACAGTTCCATGCTCCACCTCCCCTTTCCTGGCAAAATTGGCGTGATGCATCCATCACTGATTCAAAAGCGGGAACTTCTAGGAAATCAAATTCAACAAGATCAACCCCCCCGACCAATGAGGACGTTAATTCCCAAACAAACTCAACGGTTTCTTCTGTCGCCCCCTCTTCCGGGGATCATTCAGAAAAATATGTTGCCTATACAGTAGCGGGACTTTTAGCTCTTGCCTTGGTTGCTGTAGCTATAGCTATTGCTTTCGCGTTTAGGAGGAGGAAATCAAGAGATGATTCTGATGGTGCACCCTACATGACACCCCTTGATATTCGAGTCAAAACAGGTGCTAATGGGCATTACTATGTACAGCAGCCTTCCTTTGCAAACAACTATGCAAATGGGAATGCCAAACTCAAGCGTTTTGGATCTTCTTTAGACTCGGCTCAGCCCGCAAATGGTCCCATGATTTTCACCTATGACATGGTTATGGAAATAACAAACGCATTTTCTAGTAAAAATGTTATAGGAGAAGGAGGCTTTGGATTTGTTTACAAGGGTTATCTGCCAGATGGAAAAGTAGTTGCAGTAAAGCAGCTTAAGGCTGGCAGTGGGCAGGGAGAAAGGGAATTCAAGGCTGAAGTCGATATCATTAGCCGAGTACATCATCGATATTTGGTGTCATTAGTTGGTTATTGCGTCTCCGAACAGCAAAGAATTCTTATCTATCAATATGTCCCTAATGGAACACTCCATCATCACTTGCATGGAAGTGGAATGCCAGTGTTGGATTGGGTCAAAAGGCTAAAGATTGCAATAGCGCTGCTAAGGGCCTCGCATATCTTCACGAGGACTGTAAGCAGCCAAAAGATAATTCACCGAGATATTAAGTCAGAAAACATACTCTTGAATGATGCTTTTGAGGCAAAGGTTGCAGACTTTGGACTTGCTAGGCTAGCTGATGCTGCCAATAGCCACGTATCAACTAGGGTTATGGGGACCTTTGGGTACATGGCTCCAGAATATGCAACAAGTGGAAAATTAACGGACAGATCAGATGTTTACTCATTTGGGGTTGTCCTCCTTGAGCTTGTTACAGGAAAGAAACCCATTGATCAAACTCGGCCGATTGGAGATGAGAATTTGGTTGAGTGGGCTCGTCCACTTCTCCTTCGTGCAATGGAGACACGAAATTTCAGTGAAATAGTAGATCCAAGACTCGAAAAACACTTTGTGGAGAGTGAAATGTCCAGAATGGTTGAGGCAGCTGCAGCTTGTGTTCGCCACTCAGCTCCTAAACGGCCTCGTATGTTTCAGGTGGTAAGAGCCTTGGATACTGGAGACGAAAAATGTGATCTTTCTAATGGAGTGAAATATGGTCAGAGCACAGTTTATGATTCTGGCCAATATGATAGAGATATATTGGTATACAGAAGAATGGCAAATGGCACATTTTTTGATTCTGATTTTAATACGTATAGTAGAGAATGTAGTCTTTCAAAACAGACCTCGGGAGGATCCGAACAAAATTTGATGCGGCTTAGTTCTAGTGGCGAGTCAGAAACTAGAGCTATCAACTGGAATATGAGCAGTACTGAATTTAAACGGTGA 2571 0.4656 MGTEQTEVGDGSSSPSPKKDKKKQKINQDNDSDPSRKSSDSDSNPPAPTDSPAPTDSPDSDSTASKDSPNSKDSLDSDSKDSPASKDSPDSKNFPTSTDSSDSKYFPTSTDSSDSDSPASKDSPTSKDSPDSKDSPGSDSADSDSPESRSSKSPPSPSPSPSPPPSTSPSASPPPSTSSSPSPSPPPSTSPPPSPSPSPPPPSKTSSQPKPSSEDSNPSSQPQSSKDSSSPPPLPSLPSPPQPSSSLSPSPSPSPSPSPSSPPPRFQQPPSRQYSPPPPPRPRSPPPPLPQPSPAPSPLPPGSPPSNRQAEQNENSSSTPPSTQFHAPPPLSWQNWRDASITDSKAGTSRKSNSTRSTPPTNEDVNSQTNSTVSSVAPSSGDHSEKYVAYTVAGLLALALVAVAIAIAFAFRRRKSRDDSDGAPYMTPLDIRVKTGANGHYYVQQPSFANNYANGNAKLKRFGSSLDSAQPANGPMIFTYDMVMEITNAFSSKNVIGEGGFGFVYKGYLPDGKVVAVKQLKAGSGQGEREFKAEVDIISRVHHRYLVSLVGYCVSEQQRILIYQYVPNGTLHHHLHGSGMPVLDWVKRLKIAIALLRASHIFTRTVSSQKIIHRDIKSENILLNDAFEAKVADFGLARLADAANSHVSTRVMGTFGYMAPEYATSGKLTDRSDVYSFGVVLLELVTGKKPIDQTRPIGDENLVEWARPLLLRAMETRNFSEIVDPRLEKHFVESEMSRMVEAAAACVRHSAPKRPRMFQVVRALDTGDEKCDLSNGVKYGQSTVYDSGQYDRDILVYRRMANGTFFDSDFNTYSRECSLSKQTSGGSEQNLMRLSSSGESETRAINWNMSSTEFKR 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03249 856 MobiDBLite consensus disorder prediction 335 381 - -
Viun3g03249 856 MobiDBLite consensus disorder prediction 126 140 - -
Viun3g03249 856 MobiDBLite consensus disorder prediction 14 38 - -
Viun3g03249 856 SMART serkin_6 490 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03249 856 MobiDBLite consensus disorder prediction 228 305 - -
Viun3g03249 856 Gene3D Phosphorylase Kinase; domain 1 455 565 - -
Viun3g03249 856 ProSiteProfiles Protein kinase domain profile. 490 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03249 856 Pfam Protein tyrosine and serine/threonine kinase 493 764 IPR001245 GO:0004672|GO:0006468
Viun3g03249 856 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Viun3g03249 856 PRINTS Proline rich extensin signature 181 206 - -
Viun3g03249 856 PRINTS Proline rich extensin signature 161 178 - -
Viun3g03249 856 PRINTS Proline rich extensin signature 44 56 - -
Viun3g03249 856 PRINTS Proline rich extensin signature 144 160 - -
Viun3g03249 856 SUPERFAMILY Protein kinase-like (PK-like) 473 762 IPR011009 -
Viun3g03249 856 MobiDBLite consensus disorder prediction 1 382 - -
Viun3g03249 856 MobiDBLite consensus disorder prediction 306 322 - -
Viun3g03249 856 MobiDBLite consensus disorder prediction 88 125 - -
Viun3g03249 856 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 396 811 IPR047117 -
Viun3g03249 856 MobiDBLite consensus disorder prediction 54 70 - -
Viun3g03249 856 FunFam Proline-rich receptor-like protein kinase PERK8 463 565 - -
Viun3g03249 856 CDD STKc_IRAK 496 765 - -
Viun3g03249 856 Gene3D Transferase(Phosphotransferase) domain 1 566 782 - -
Viun3g03249 856 MobiDBLite consensus disorder prediction 152 207 - -
Viun3g03249 856 MobiDBLite consensus disorder prediction 71 87 - -
Viun3g03249 856 MobiDBLite consensus disorder prediction 208 227 - -
Viun3g03249 856 FunFam proline-rich receptor-like protein kinase PERK8 566 779 - -
Viun3g03249 856 ProSitePatterns Protein kinases ATP-binding region signature. 496 518 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03249 Viun-Chr3 39317453 39322490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03249 377 833 Trihelix Transcription Factor Family AT1G70460 54.812 5.16e-175 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Viun3g03249 PK_Tyr_Ser-Thr 1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03249 - - vun:114178585 1071.23