Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03248 ATGAGTGGTTTGGGTGTAGTACATTGGCTTAGACCCCTTGTGGAGACCAATGTTTGGGATTATGTAGTTCTTTGGAAATATGGAGATGACCCAACTAGGTTTATTGAGTGGATTGGTTGCTGTTGTAGAGGGAGTTGCAGTATGAACATTGGTGTGGAGGCCAAAGAGGAAAAGGGTGAAGAATATCGCTTAGCTCCCATTTGCAGGGATGATTATCTTCAGCATCATGTTAGAACAAAGGCTTGTGAGGCTCTTGCTCAGCTTCCTTTTGCATTGTCTCTCTATTCTGGTGTGCATGGAGAGGTTGCCATATCACAACAATCAAGATGGCTTACGAAGGATTCAATTGGAACCCAAGTTTTGGTCCCTGTTGTTGGAGGTCTTATTGAGCTCTTCTCTGAGAAGCTGATTCCAATGGATATGAATATCATAGAGTTCATAACAGCACATGGCTGTGTCTCTTTGAAGCAAGAAGCCATATCTGCACAGAGCTACACCAGTCTGAACATCATTGAACATCTGCCACTAAGGGAACAGTACTCACATTGGTGGCTACCACACATGTCGACAACTTTAACTCCTATTGTCCATCAGCCGCCAACAAAACAGTGCACCTCCCATCCCAGCATTGAAGGACCCCCAAGCGGGTCTAATCCTTCAACTGAAGAACCATCATTTGATTCAAAATTTGTTGGTTTGATTCCAGATGAATATCTTAAACAATCAGATAAAATGTCTCCCATCCCCAAAACTAAAATGCCCAAGTACAATAAAACTTCAGGGAAGCAGCAGAGAGGTTTGAGTTCTCATTGCAGCGATGGGGAAGAAGGTAAATCAAAACTGGTCAAGGAGCCTCAGAAGGAAGGGTACCAAGCTAAAAATCTTGTAACTGAGAGGAATAGGAGGAACAAGATTAAAAAAGGACTTTTTACACTGCGGTCTCTAGTCCCAAAGATAACGAAGATGGATAGAGCTGCAATTCTCGCAGACGCAGTTGACTATATAAAGGAATTACAAGCACAAGTGAAAGAACTTAAAGATGAGGCCAGGGCTTTGGAAGTTCAGGACAGTGAGAACACGCCACAATTGAGGAAGACGGCTAACAAAGAACAAGAAGGAACCAGGAGTAACACTCTGAATCAAAGTTCTTCTGATTGCACTAAAAATATGCAGATGGAAGTACAAGCAGAAGTGCACCACATTGGCAAGAAAGATTTCTTAATTAAGTTATACTGTGAGCAGAAGCAAGGTAGATTCTCAAAGTTGATGGAAGCTATACACTCAATTGGACTACAGGTGGCTAGTGCCAATATGACGACATTTGATGATAAAGTCCTTAACATTCTGACTGTTAAGGCAACCAAGAAGGATATTCAACCAACTAAACTGAAAGAGTACTTAATACAGAAGACAAGTGAAGATAGACAAAGTAGGTAA 1437 0.4175 MSGLGVVHWLRPLVETNVWDYVVLWKYGDDPTRFIEWIGCCCRGSCSMNIGVEAKEEKGEEYRLAPICRDDYLQHHVRTKACEALAQLPFALSLYSGVHGEVAISQQSRWLTKDSIGTQVLVPVVGGLIELFSEKLIPMDMNIIEFITAHGCVSLKQEAISAQSYTSLNIIEHLPLREQYSHWWLPHMSTTLTPIVHQPPTKQCTSHPSIEGPPSGSNPSTEEPSFDSKFVGLIPDEYLKQSDKMSPIPKTKMPKYNKTSGKQQRGLSSHCSDGEEGKSKLVKEPQKEGYQAKNLVTERNRRNKIKKGLFTLRSLVPKITKMDRAAILADAVDYIKELQAQVKELKDEARALEVQDSENTPQLRKTANKEQEGTRSNTLNQSSSDCTKNMQMEVQAEVHHIGKKDFLIKLYCEQKQGRFSKLMEAIHSIGLQVASANMTTFDDKVLNILTVKATKKDIQPTKLKEYLIQKTSEDRQSR 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03248 478 MobiDBLite consensus disorder prediction 196 226 - -
Viun3g03248 478 MobiDBLite consensus disorder prediction 269 287 - -
Viun3g03248 478 MobiDBLite consensus disorder prediction 372 386 - -
Viun3g03248 478 MobiDBLite consensus disorder prediction 241 289 - -
Viun3g03248 478 SMART finulus 295 344 IPR011598 GO:0046983
Viun3g03248 478 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 289 362 IPR036638 GO:0046983
Viun3g03248 478 Gene3D - 282 356 IPR036638 GO:0046983
Viun3g03248 478 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 196 469 - -
Viun3g03248 478 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 148 IPR025610 -
Viun3g03248 478 MobiDBLite consensus disorder prediction 353 386 - -
Viun3g03248 478 Pfam Helix-loop-helix DNA-binding domain 296 339 IPR011598 GO:0046983
Viun3g03248 478 MobiDBLite consensus disorder prediction 196 225 - -
Viun3g03248 478 Coils Coil 328 355 - -
Viun3g03248 478 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 289 338 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03248 Viun-Chr3 39314628 39317371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03248 10 471 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 31.641 1.78e-68 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g03248 bHLH-MYC_N 6.6e-16 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03248 - - gmx:100807261 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03248 3 39314628 39317371 Viun3g03248 3 39314628 39317371 ECH