Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03233 ATGTCAACACTGAACCATCTTTTGGATCTTCCAGAACAGATATGTTATGTAGAATGTGGATTCTGTACCACAATATTAATGGTAAGCGTCCCATGCAGCAGTTTATCAATGGTGGTGACAGTCAGATGCGGCCACTGCACAAGCCTTCTCTCTGTTAATATGAACAAAGCTTCATTTCTCCCTTTTCACCTTCTTGCTTCTCTTTCTCATCTTGAGCCAAACGAAGTTAGTTCAGAAGATGGTGCAGACAAGACTTTGAAGAGCTATAGTGCATCCATAGTAACCAGTTCTGATTGTGAGGAAGAGAACATGACTCAAATTTCCAGTGTTGTGAATAAACCCCCAGAGAAGAGACAGAGGACACCATCTGCTTATAACCGCTTCATCAAAGAAGAGATTAAAAGGCTAAAAGCTGAAAACCCTAAAATGGCCCACAGAGAAGCTTTCAGCACTGCTGCAAAAAATTGGGCCAATTTCCCCCCTTCTCACTGCAAAGGAGAAGCAACCAGCTGTAAAATTGTGGATCTGGATTGCCATGTAGAGTCTCCCGATGCTTCCCAGGTACACAAAGAAGGCCAAGGTTTCCGTGGAAGAAAGGTTCCAAGGAATTCTGTCTGA 618 0.432 MSTLNHLLDLPEQICYVECGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMNKASFLPFHLLASLSHLEPNEVSSEDGADKTLKSYSASIVTSSDCEEENMTQISSVVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPKMAHREAFSTAAKNWANFPPSHCKGEATSCKIVDLDCHVESPDASQVHKEGQGFRGRKVPRNSV 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03233 205 MobiDBLite consensus disorder prediction 183 205 - -
Viun3g03233 205 PANTHER PROTEIN YABBY 6-RELATED 2 166 IPR006780 GO:0007275
Viun3g03233 205 SUPERFAMILY HMG-box 108 161 IPR036910 -
Viun3g03233 205 FunFam Axial regulator YABBY 4 108 173 - -
Viun3g03233 205 MobiDBLite consensus disorder prediction 183 197 - -
Viun3g03233 205 CDD HMG-box_SF 120 162 - -
Viun3g03233 205 Pfam YABBY protein 11 164 IPR006780 GO:0007275
Viun3g03233 205 Gene3D High mobility group box domain 105 165 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03233 Viun-Chr3 39098995 39112259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03233 2 205 C2C2-YABBY Transcription Factor Family AT1G23420 58.333 3.32e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Viun3g03233 YABBY 8.6e-64 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03233 K25796 - gmx:100803001 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03233 3 39098995 39112259 Viun3g03233 3 39098995 39112259 ECH
Viun2g01256 2 23072505 23074643 Viun3g03233 3 39098995 39112259 PCT