Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03226 ATGGAAGACGAAATGTACGGCATGCCGTCGACGGCGGAGTACTCGGAGAAAGCGTTGATGACGCCAGAGAGCATATTTCCGGCTGAGTACCACGGCTTCCTAATGTCCTCCGGTAGCCGGATTCCGATGTTCGGATCCGACGAGTTGCTCTCCGCCGCCGTCGCCATCACCGCCGGCAGCGGAGCTGAACCCTACCCGAACGCCTCCGTCGCACCCGAAATCCAGCGCCACCACGACACCTCTTCTCTCATCAAAGCCAAAATCGCCTCTCACCCTCACTACCCTCGTCTCCTCCAAGCCTACATCGATTGCCAGAAGGTGGGAGCGCCTCCAGAAATCGCGTGCTTGTTAGAGGAAATCCGACGAGAAAACGACGTTTGCAAGAGGGACGTTGTTTACACGTGCGTTGGAGCCGATCCCGAACTCGACGAGTTCATGGAGACCTACTGTGACATGCTGGTGAAATACAAATCCGATCTGACGCGGCCTTTTGACGAAGCTACCACCTTCCTCAACAAGATCGAAACGCAGCTTATGGATCTCTGCACCGGTTCCTCTCTTCCAACCCTTTCCGACGATGGAGGTGTATCTTCTGAAGAAGGATTTAGTGCTGGAGATGGTGATTTTCAAGATGAACAAGTGCATAATGAAGATAGAGAGTTGAAGGATAAACTTTTACGTAAGTTTGGAAGTCATATTGGTTCACTAAAATTAGAATTTTCAAAGAAAAAAAAGAGAGGCAAACTGCCAAAAGATGCTAGACAAATGCTACTTCAGTGGTGGAATATTCACTACAAATGGCCTTATCCTACGGAAGGTGATAAGATTGCACTGGCTAAATCAACTGGGTTAGACCAAAAGCAAATTAACAATTGGTTCATTAATCAAAGAAAGCGTCACTGGAAGCCATCGGAGAATATGCCGTTTTCTATGGTGGATGGTCTTACCGGTCGGTTCCTTACGGATGAGTGA 972 0.4897 MEDEMYGMPSTAEYSEKALMTPESIFPAEYHGFLMSSGSRIPMFGSDELLSAAVAITAGSGAEPYPNASVAPEIQRHHDTSSLIKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLEEIRRENDVCKRDVVYTCVGADPELDEFMETYCDMLVKYKSDLTRPFDEATTFLNKIETQLMDLCTGSSLPTLSDDGGVSSEEGFSAGDGDFQDEQVHNEDRELKDKLLRKFGSHIGSLKLEFSKKKKRGKLPKDARQMLLQWWNIHYKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRHWKPSENMPFSMVDGLTGRFLTDE 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03226 323 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981|GO:0006355
Viun3g03226 323 SMART KNOX2_2 132 183 IPR005541 GO:0003677|GO:0005634
Viun3g03226 323 SMART ELK_2 220 241 IPR005539 GO:0003677
Viun3g03226 323 SMART KNOX1_2 82 126 IPR005540 GO:0003677|GO:0005634
Viun3g03226 323 CDD homeodomain 252 304 IPR001356 GO:0003677
Viun3g03226 323 Pfam KNOX2 domain 135 182 IPR005541 GO:0003677|GO:0005634
Viun3g03226 323 Pfam KNOX1 domain 84 125 IPR005540 GO:0003677|GO:0005634
Viun3g03226 323 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677
Viun3g03226 323 Gene3D - 239 309 - -
Viun3g03226 323 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 86 310 - -
Viun3g03226 323 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677
Viun3g03226 323 SMART HOX_1 242 307 IPR001356 GO:0003677
Viun3g03226 323 Pfam ELK domain 220 241 IPR005539 GO:0003677
Viun3g03226 323 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677|GO:0006355
Viun3g03226 323 SUPERFAMILY Homeodomain-like 241 314 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03226 Viun-Chr3 38980419 39001693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03226 3 323 Homeobox Transcription Factor Family AT1G23380 65.868 4.57e-145 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Viun3g03226 KNOX2 1.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03226 - - gmx:100786454 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01266 2 23215810 23224829 Viun3g03226 3 38980419 39001693 PCT