Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03221 ATGATTCCTTCTTCCGTTTCCTTTCTGCTTCTCTTCCTTTCTGTGTTCACACCTTCTGCTCTTTCCGATCCAAGAGCGCAGAGAGCCGCTCTGCTATGCACCAACCGCACCGTTTCCTCTCTTTCTCTGCGCCAAGTTTTCATCGCAAACTTTCTGGCGGCGATGGACGCGTTGACCCCTATGACGACGACTCGGCAGCACGGCGCCGTGGTGAAGGGGTCAGGAAACGTCACCGTTTACGCCATGGGTGAGTGCATGAAAGACCTGTCGCAGTCGGACTGCAATGTGTGCCTGGCGCAGTGCAAGACGCAGCTCCTCTCGTGCCTCCCTTTCCAGAAAGGGACACGGGGTGGCAGGTTGTTCTTCGACGGCTGCTACCTCCGCTACGACGACTACAACTTCTTCGCCGAGAGCTTTGGCAACCAAGACACCACTGTGTGCGGCACCAGTGGGAGTATTAACAGTAATAGTAATAATAGTGTTGGTGCTAACAGTAGCCGTATTTATAAGGCCAACGCTTTGGAGCTAGTTAGGAACCTGAGCGAGGTGGCGCCCAAAAACGATGGGTTTCTGGTGGGGTCGGTGGGGAGAAAGAACGTGAGTGTTTACGGGTTGGCTCAGTGCTGGGAGTTTGTGAACGGAAGTGCCTGCAAGAAATGTTTGGCGGATGCTGCCACGAGGGTTTCTTCGTGTGCAACACAAGAAGCGAGGGCGTTGAATGCTGGTTGTTATTTGAGGTACTCTGCGCAGAAGTTTTATAACAATTCAACCGATGTTGCAACTTCTGGAAATCATGGACGACGGAGTCTATCTAAAATTCTGGCCGCGTCTGCTGCTGCCGCGGCTCTTCTGCTGGTTGTTGCAACGGTTGTTTTCTTTATAAGGAAGAAAATTGTGACAAGGAGAAGAGAAAGAAGACAGTTTGGTGCTTTTCTGGACAGAGTGAATAAGTCCAGGCTAAATATTGCATATGAGATTCTTGAAAAGGCAACAGATTACTTCAATGATGCCAACAAGCTAGGACAAGGAGGGTCAGGTTCTGTTTATAAAGGAGTTATGCCAGATGGAACTACTGTTGCCATAAAAAGGCTAAGATTTAACACAACACAATGGGTGGATCATTTCTTCAATGAGGTCAATTTGATAAGTGACATTCAACACAAGAATCTTGTAAAACTTTTAGGATGCAGTATTACGGGACCTGAAAGCCTTCTTGTTTATGAATACGTGCCTAATCAGAGCCTCCATGATCACCTTTCTGTTAGAAGGATTTCTCATCCACTGAGTTGGGAATTCAGACATAAGATTATATTAGGAATTGCAGAGGGCTTGGCCTACCTTCATGAGGAATCACATCTGAGAATCATTCATAGAGACATAAAACTGAGCAACATTCTACTTGAGGAGGACTTCACACCAAAGATTGCTGATTTTGGACTTGCTAGATTATTTCCAGAAGATAAGTCTCACATTAGCACAGCCATTGCTGGGGGTATATGGCTCCAGAGTATGTCATTCGTGGGAAGTTGTCTGAGAAAGCAGATGTTTACAGTTTTGGAGTTCTAG 1566 0.4693 MIPSSVSFLLLFLSVFTPSALSDPRAQRAALLCTNRTVSSLSLRQVFIANFLAAMDALTPMTTTRQHGAVVKGSGNVTVYAMGECMKDLSQSDCNVCLAQCKTQLLSCLPFQKGTRGGRLFFDGCYLRYDDYNFFAESFGNQDTTVCGTSGSINSNSNNSVGANSSRIYKANALELVRNLSEVAPKNDGFLVGSVGRKNVSVYGLAQCWEFVNGSACKKCLADAATRVSSCATQEARALNAGCYLRYSAQKFYNNSTDVATSGNHGRRSLSKILAASAAAAALLLVVATVVFFIRKKIVTRRRERRQFGAFLDRVNKSRLNIAYEILEKATDYFNDANKLGQGGSGSVYKGVMPDGTTVAIKRLRFNTTQWVDHFFNEVNLISDIQHKNLVKLLGCSITGPESLLVYEYVPNQSLHDHLSVRRISHPLSWEFRHKIILGIAEGLAYLHEESHLRIIHRDIKLSNILLEEDFTPKIADFGLARLFPEDKSHISTAIAGGIWLQSMSFVGSCLRKQMFTVLEF 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03221 521 Pfam Protein kinase domain 335 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03221 521 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 80 498 - -
Viun3g03221 521 ProSiteProfiles Gnk2-homologous domain profile. 26 134 IPR002902 -
Viun3g03221 521 ProSiteProfiles Gnk2-homologous domain profile. 149 252 IPR002902 -
Viun3g03221 521 SMART serkin_6 334 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03221 521 FunFam Cysteine-rich receptor-like protein kinase 3 145 252 - -
Viun3g03221 521 Gene3D - 28 134 IPR038408 -
Viun3g03221 521 Gene3D - 151 252 IPR038408 -
Viun3g03221 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Viun3g03221 521 Gene3D Phosphorylase Kinase; domain 1 295 409 - -
Viun3g03221 521 Gene3D Transferase(Phosphotransferase) domain 1 410 508 - -
Viun3g03221 521 SUPERFAMILY Protein kinase-like (PK-like) 319 497 IPR011009 -
Viun3g03221 521 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Viun3g03221 521 FunFam Os07g0541700 protein 410 498 - -
Viun3g03221 521 FunFam Putative DUF26-domain receptor-like protein kinase family protein 293 409 - -
Viun3g03221 521 Pfam Salt stress response/antifungal 39 132 IPR002902 -
Viun3g03221 521 Pfam Salt stress response/antifungal 160 249 IPR002902 -
Viun3g03221 521 FunFam Cysteine-rich receptor-like protein kinase 2 26 134 - -
Viun3g03221 521 ProSiteProfiles Protein kinase domain profile. 334 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03221 Viun-Chr3 38962734 38965524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03221 17 497 Receptor kinase-like Gene Family AT1G70530 59.129 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun3g03221 Pkinase 6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03221 - - gmx:100787359 775.778