Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03211 ATGGCTTCTCTCACTCCTCTTCTTCCATTTCTTTTCCCTTTTCTGGCAACTTCTTTTGTCACAGTTTTTGCCTTTCAGGTCTCAATCAAACCTTATAATTTGTCTCCTTTAAATTGCTCTGCTAAGATCACATGTAATGCCTCCCTCTACCACATATCTCATAATCTCACCATTCAGCAAATTGCCTCTTTTTACTCCGTTACTTCTTCCCATATCACACCTATAAAACATGGCACCAAACAAGACTACCTCGTCACAGTACCTTGTTCATGCAAACATACGAGTGACCTTAGCGGATATTTCTATGACACCATCTACAAAGTAAGGCCACGTGACACTTTTGTGAATATTTCAAACCTGGTTTTCAGTGGCCAAGCTTGGCCAGTTAATGGTACATTTCACCCAGATGAGAATTTAGCAATACACCTTCCGTGTGGGTGCTCAGAAAGTGGCTCTCAAATAATTGTCACCTATACAGTTCAGCCAGATGATACACCAACACTGATTGCTGATCTGCTAAATGCTTCACTGGTTGACATGATGAGCATGAACAACGTTCTAACTCCGAACTTTAAATTCATAGATGCTGGTTGGGTTCTATTTGTTCCCAAGGGATCCAAAGGGGTATTACCCAGTACTGCTGCTGAAAATGAAAAGAAACTTAAGTGGACAACAACAATAATTGGCATCTTAGCGGGAGTGACATTGCTTTCAGTTACTACAACCATCATTCTCTTTGTCAGGGTAAATAAAGTGACTCAAATGAGCAGTGAAGATTCACACCTTTTCTCTAGAAGATCAATGGCCAATAGAACTATTTCCTCAAAGTATAACTTTCAAAAGGAATATATAGAAGGCTTATTCATGCTAAATTTTGGTGCAGATGTAATTTCATTAGAATCAGAAAGACCAATAGTATACAACCTTGAGGATATTGAAGAGGCTACGAATAACTTTGATGAAAGTCGAAGAATAGGAAGTGGTGGATATGGAAGTGTTTATTTTGGAGTGTTAGGGAACAAGGAAGTTGCTGTGAAGAAAATGAGGTCCAATAAATCTAAAGAGTTCTATGCAGAACTCAAGGTCTTGTGTAAGATCCACCATATCAACATTGTGGAGCTGTTGGGATATGCAAACGGAGAAGATGACCTCTATTTGGTGTATGAGTACGTTCCAAATGGATCTCTCAGTGATCATCTTCATGACCCATTACTGAAAGGGAACCAGCCTCTTTCTTGGAGTGTTAGGGTTCAAATTGCACTGGATGCTGCAAAAGGTCTTGAATATATACATGACTATACAAAAGCACGATATGTGCACCGTGACATAAAGAGTAGCAATATTCTACTTAATGACAAGTTCAGAGCAAAGGTGGGAGATTTTGGACTTGCAAAGCTTGTAGACAGAACCGATGATGAAAATTTTATAGCAACCAGACTTGTAGGAACACCAGGCTACCTTCCACCAGAGTCTCTGAAGGAGCTTCAAGTGACCCCAAAAACCGATGTGTTTGCGTTTGGAGTGGTGCTTTCAGAGCTGTTAACAGGGAAACGAGCATTATTTCGGGAAAGCAAAGAAGAGATTAAAATGAAATCACTCATTAGTGTTGTTAATAAAATATTCCAAGATGATGAACCTGAGATTGCCTTAGAAGATGCCATAGATAAGAATCTTGAAGCAAGCTATCGGATGGAAGATGTCTACAAGATGGCAGAAATAGCTGAGTGGTGCTTGGAAGAAGATCCAATAGAGAGGCCTGAAATGAGGGATATAATTGGGGCACTGTCTCAGATTGTGATGTCCACAATAGAGTGGGAAGCATCCCTATGTGGAAATAGCCAGGTCTTCAGCGGGTTGTACAGTGGAAGATGA 1872 0.4017 MASLTPLLPFLFPFLATSFVTVFAFQVSIKPYNLSPLNCSAKITCNASLYHISHNLTIQQIASFYSVTSSHITPIKHGTKQDYLVTVPCSCKHTSDLSGYFYDTIYKVRPRDTFVNISNLVFSGQAWPVNGTFHPDENLAIHLPCGCSESGSQIIVTYTVQPDDTPTLIADLLNASLVDMMSMNNVLTPNFKFIDAGWVLFVPKGSKGVLPSTAAENEKKLKWTTTIIGILAGVTLLSVTTTIILFVRVNKVTQMSSEDSHLFSRRSMANRTISSKYNFQKEYIEGLFMLNFGADVISLESERPIVYNLEDIEEATNNFDESRRIGSGGYGSVYFGVLGNKEVAVKKMRSNKSKEFYAELKVLCKIHHINIVELLGYANGEDDLYLVYEYVPNGSLSDHLHDPLLKGNQPLSWSVRVQIALDAAKGLEYIHDYTKARYVHRDIKSSNILLNDKFRAKVGDFGLAKLVDRTDDENFIATRLVGTPGYLPPESLKELQVTPKTDVFAFGVVLSELLTGKRALFRESKEEIKMKSLISVVNKIFQDDEPEIALEDAIDKNLEASYRMEDVYKMAEIAEWCLEEDPIERPEMRDIIGALSQIVMSTIEWEASLCGNSQVFSGLYSGR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03211 623 Pfam Protein kinase domain 320 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03211 623 ProSiteProfiles Protein kinase domain profile. 319 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03211 623 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 37 617 IPR044812 GO:0019199|GO:0045087
Viun3g03211 623 FunFam Kinase family protein 295 390 - -
Viun3g03211 623 ProSiteProfiles LysM domain profile. 156 202 IPR018392 -
Viun3g03211 623 Gene3D LysM domain 147 212 IPR036779 -
Viun3g03211 623 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Viun3g03211 623 FunFam PTI1-like tyrosine-protein kinase 3 391 609 - -
Viun3g03211 623 Gene3D Phosphorylase Kinase; domain 1 298 390 - -
Viun3g03211 623 SUPERFAMILY Protein kinase-like (PK-like) 301 595 IPR011009 -
Viun3g03211 623 Gene3D Transferase(Phosphotransferase) domain 1 391 609 - -
Viun3g03211 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Viun3g03211 623 SUPERFAMILY LysM domain 156 203 IPR036779 -
Viun3g03211 623 Pfam LysM domain 158 203 IPR018392 -
Viun3g03211 623 SMART serkin_6 319 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03211 Viun-Chr3 38800770 38803841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03211 299 623 Receptor kinase-like Gene Family AT1G51940 51.964 1.43e-114 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Viun3g03211 Pkinase 9.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03211 - - gmx:100791718 988.793