Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03198 ATGGAAGAAGCATTGCGTCGTCTTAACGGAGTCGCACCAACTCAAGAACCCGACGTCGTTTCAGACCCTCACCCCAAGAAGTGTGCTGCCAAGCGCACCTTGCGTGACACCGCCAACTCCGGCACCGCCATGCGTTACCGTGGAGTTCGCCGCCGCCCCTGGGGTCGCTACGCTGCTGAGATCCGTGACCCGCAATCTAAGGAGCGGCGCTGGTTGGGCACTTTTGACACGGCGGAGGAGGCTGCCTGTGCCTACGACTGCGCCGCCCGAGCCATGCGCGGTGTCAAGGCCCGCACCAACTTCGTCTACCCTGACGCGGCTGATCCCCACCTCTTCCATCCCTTTAACCTCCCCAAGCACTGCCACGTCAGCAGGTTTCCCCATAACACAAACTTGGGGAGTGACTTTCCTGCAACTTCCCACAACAGCTCTTCTTCCTCTACTTCCTCTCTCAACATGCTTCTCTTTCGTGACTTCCTTAACTCTTCTTCCAACCCCTGTCTGCTTTCTTCTGCTTCCAATCAGCAGTTTCATAACAGTAAATCTCCTACTTATGTCAACACTTCATCTTCAACTCTACCTCCTACTGCTACTAACTATCTCCACGGCTGTTGTGTCGGCAACGCTGATAACTACCAAAACACTGTTGGTGCCAATCATGGAGTTGAGGTAGCTGATGTTATTGATGAAGACTCCGACTTTTTCCCTCGTGAGTCTTCGGATTCTGGGCTGCTGGAAGAGATAGTTCACAAGTTCTTGCCCAAGTCGAAGCCAAAAGTTGAGACTTCGACTTTGAATCAGTCTCTTCCCGAGTCGGTTCCTCAACAGATATATGATCATGTGGTTGTTTCTGCTAGCAAGGGTTATGGTGATTCCAGGATGAGGGTTCTTCCCAAGGTCGAAGGTTTTGGTGTCTGTCATGATTCTCCCATGCAACAATTTGAAGCTCTTAGTGGCTTTAATGCCATGCAGGGTATGACCTCTTTCCAGAGAGACAACCAGTTTATGTTGAACCACATTCCAGGGTTCTCCAGCATTGAAGATTATCTTCAGTATCCCGAACTTTTGAATTCCTTTGCGACCAGGATGCAAAATGCTTAA 1101 0.5077 MEEALRRLNGVAPTQEPDVVSDPHPKKCAAKRTLRDTANSGTAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGVKARTNFVYPDAADPHLFHPFNLPKHCHVSRFPHNTNLGSDFPATSHNSSSSSTSSLNMLLFRDFLNSSSNPCLLSSASNQQFHNSKSPTYVNTSSSTLPPTATNYLHGCCVGNADNYQNTVGANHGVEVADVIDEDSDFFPRESSDSGLLEEIVHKFLPKSKPKVETSTLNQSLPESVPQQIYDHVVVSASKGYGDSRMRVLPKVEGFGVCHDSPMQQFEALSGFNAMQGMTSFQRDNQFMLNHIPGFSSIEDYLQYPELLNSFATRMQNA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03198 366 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Viun3g03198 366 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Viun3g03198 366 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Viun3g03198 366 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Viun3g03198 366 CDD AP2 45 101 IPR001471 GO:0003700|GO:0006355
Viun3g03198 366 MobiDBLite consensus disorder prediction 1 32 - -
Viun3g03198 366 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Viun3g03198 366 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Viun3g03198 366 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Viun3g03198 366 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 33 209 - -
Viun3g03198 366 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03198 Viun-Chr3 38550155 38551255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03198 1 255 AP2-EREBP Transcription Factor Family AT1G24590 40.217 3.46e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun3g03198 AP2 6.9e-12 CL0081