Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03189 ATGGATTTCGAGGACCATGACGAAGCTCAGCTGGGGATGCCCGGACCCACCTATGATCACTCGCCGTTCAACCCCTGCCGAGTCAAAATGCCAACTCACACCGCCCAGGAAGACCCGCTGCCGCCGGCGGCCACTCCACCACCCACCGTCAACCGAAACAGCGCCAGGGGAAAGTACAAGGAGTGCCTCAAGAACCACGCCGTCGGAATCGGCGGCCACGCGCTCGACGGCTGCGGCGAGTTCATGGCGGCGGGCGCCGAGGGTACCCTGGATGCCCTCAAATGCGCTGCCTGCAACTGCCACCGCAACTTCCACCGGAAGGACCCGTCGGAGAGCTCCTTCCTAGTGCCCTTCCAGCAGCGCCGCCACCAGCCGCCGCCGCAGTTCGCGGCGGCCTACTACCGGGCCCCGGCGGGGTACTTGCAGGTGGCGGGGCCGCATCGTGGAGGCCTTGCCACGCTGGCACTCCCGTCCACGTCAGGTGCGGGCGGTGGGGCCCAGAGCCCGAGGGAGGACCAGGAAGATGTGTCGGACCCAAGTGGTGGTGGTAGCGGGTCCAACAAGAAGAGGTTCAGAACCAAGTTCACTCTGGAACAGAAAGACAAGATGCTCGCTTTCGCTGAAAAACTGGGTTGGAGGATTCAGAAGCACGACGAGAGTGTCGTGCAGGAGTTCTGTTCCCAAACTGGTGTTCCGCGTCACGTCCTCAAGGTTTGGATGCATAACAACAAGCACACCCTTGGTAAGAAGCCCTAG 756 0.6283 MDFEDHDEAQLGMPGPTYDHSPFNPCRVKMPTHTAQEDPLPPAATPPPTVNRNSARGKYKECLKNHAVGIGGHALDGCGEFMAAGAEGTLDALKCAACNCHRNFHRKDPSESSFLVPFQQRRHQPPPQFAAAYYRAPAGYLQVAGPHRGGLATLALPSTSGAGGGAQSPREDQEDVSDPSGGGSGSNKKRFRTKFTLEQKDKMLAFAEKLGWRIQKHDESVVQEFCSQTGVPRHVLKVWMHNNKHTLGKKP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03189 251 Gene3D - 173 249 - -
Viun3g03189 251 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 108 IPR006456 -
Viun3g03189 251 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 46 247 - -
Viun3g03189 251 MobiDBLite consensus disorder prediction 1 54 - -
Viun3g03189 251 Pfam ZF-HD protein dimerisation region 58 108 IPR006456 -
Viun3g03189 251 NCBIfam homeobox domain, ZF-HD class 188 244 IPR006455 -
Viun3g03189 251 SUPERFAMILY Homeodomain-like 178 249 IPR009057 -
Viun3g03189 251 FunFam Zinc-finger homeodomain protein 2 175 249 - -
Viun3g03189 251 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 58 108 IPR006456 -
Viun3g03189 251 MobiDBLite consensus disorder prediction 152 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03189 Viun-Chr3 38434479 38435804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03189 55 247 ZF-HD Transcription Factor Family AT4G24660 54.000 3.03e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Viun3g03189 ZF-HD_dimer 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03189 - - gmx:100798992 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01300 2 23616603 23617774 Viun3g03189 3 38434479 38435804 PCT