Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03173 ATGGCCGGTGCCACAAATTGGCTTACGTTTTCGTTGACTCCCATGGAAATGCTCAGATCCCCGGACTCTTCCTCTCACTGCATGCTCGATAATTTTTATGCCACCAATGGGTGGACAAATTCCAAGGGATTAATGGATTCTGAGAGTGAAAACCAGCCACTCGTGGTGCCGAAAGTGGAGGATTTTTTGGAGAACCAAACGGAGACTCAACAAGACGATTCTTCGCTGACCCAAATTTACGACCATGGCTCTGCCGCTGTTTACTTCGGCGACCAGCAAGATCTGAACGCCATTCCAGGGTTTCAACCATTCTCAGGTACCAACTCGAGCCCCGAGTTGGATGACTCAGCCTCAGACAAGACCACTCGGGTTGCACCAGCTGAGTTAGGTGCCCACTCAGGAGAGTCTAGCAAAGGAGCTTTGTCTTTATGTGATGCTGCTGCACATGAGAAAGCCATCATTGCGGTGGAGTTTGCTACACCTAAGAAGGTTTCTCAGACCATTGGCCAGAGAACTTCAATATACAGAGGGGTCACAAGACACCGATGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGACGAGAGGGTCAGGCCAGGAAGGGGCGTCAAGTGTACTTGGGTGGATATGACAAGGAAGAAAAGGCTGCGAGAGCGTATGATTTAGCAGCTATCAAGTACTGGGGACCAACAGCAACCACCAACTTTCCTATTTCCAATTATACAAAGGAATTGGAGGAGATGAAACATGCAGGAAAGCAAGAATTCATTGCATCACTGCGAAGGAAAAGTAGTGGATTTTCAAGGGGAGCTTCTGCATACAGGGGTGTTACGAGGCATCATCAACAAGGTAGATGGCAAGCAAGAATCGGCCGAGTTGCGGGAAACAAGGATCTATATCTGGGAACATTTGCGACTGAAGAGGAAGCAGCTGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGTGCAAGCGCTGTGACCAATTTTGAGATGAACAGATACGATGTGGAGAATATATTGAATAGCTCTCTTCCAGTTGGTGGGGTAGCAAAAAGATTGAAACTTTCCTCCCCAGAATCGGAGAAGAAAAATCTTGTTGGTAGTACTAATGAGCAACCTCAGGGCACAAACGAGAGTAGCACCATCAATTTCTCTGCCATTCAGCCAGTTGCATCTATACCTTATGATTCTGCAAATGCGTACCCACAAAACCTTCTCCACCATTTTCATCATTCCAGCGGTGGAAGTAGCTCAGTACAAGAATCTGCTGCAATTGTGACCAATGCAACTTCACTCACCATCCTTCCACCACCACCAGTTCCTGGGTTCTTTTTATGGCCTCCTCAGTCCTTTTGA 1368 0.4722 MAGATNWLTFSLTPMEMLRSPDSSSHCMLDNFYATNGWTNSKGLMDSESENQPLVVPKVEDFLENQTETQQDDSSLTQIYDHGSAAVYFGDQQDLNAIPGFQPFSGTNSSPELDDSASDKTTRVAPAELGAHSGESSKGALSLCDAAAHEKAIIAVEFATPKKVSQTIGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAAIKYWGPTATTNFPISNYTKELEEMKHAGKQEFIASLRRKSSGFSRGASAYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGASAVTNFEMNRYDVENILNSSLPVGGVAKRLKLSSPESEKKNLVGSTNEQPQGTNESSTINFSAIQPVASIPYDSANAYPQNLLHHFHHSSGGSSSVQESAAIVTNATSLTILPPPPVPGFFLWPPQSF 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03173 455 SMART rav1_2 174 246 IPR001471 GO:0003700|GO:0006355
Viun3g03173 455 SMART rav1_2 276 340 IPR001471 GO:0003700|GO:0006355
Viun3g03173 455 CDD AP2 173 242 IPR001471 GO:0003700|GO:0006355
Viun3g03173 455 Gene3D AP2/ERF domain 276 336 IPR036955 GO:0003700|GO:0006355
Viun3g03173 455 Gene3D AP2/ERF domain 174 242 IPR036955 GO:0003700|GO:0006355
Viun3g03173 455 ProSiteProfiles AP2/ERF domain profile. 174 240 IPR001471 GO:0003700|GO:0006355
Viun3g03173 455 MobiDBLite consensus disorder prediction 99 121 - -
Viun3g03173 455 Pfam AP2 domain 174 232 IPR001471 GO:0003700|GO:0006355
Viun3g03173 455 Pfam AP2 domain 276 326 IPR001471 GO:0003700|GO:0006355
Viun3g03173 455 CDD AP2 275 334 IPR001471 GO:0003700|GO:0006355
Viun3g03173 455 MobiDBLite consensus disorder prediction 99 115 - -
Viun3g03173 455 SUPERFAMILY DNA-binding domain 275 335 IPR016177 GO:0003677
Viun3g03173 455 FunFam AP2-like ethylene-responsive transcription factor ANT 173 242 - -
Viun3g03173 455 FunFam AP2-like ethylene-responsive transcription factor 275 336 - -
Viun3g03173 455 ProSiteProfiles AP2/ERF domain profile. 276 334 IPR001471 GO:0003700|GO:0006355
Viun3g03173 455 MobiDBLite consensus disorder prediction 359 383 - -
Viun3g03173 455 PRINTS Ethylene responsive element binding protein signature 316 336 IPR001471 GO:0003700|GO:0006355
Viun3g03173 455 PRINTS Ethylene responsive element binding protein signature 175 186 IPR001471 GO:0003700|GO:0006355
Viun3g03173 455 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 53 405 - -
Viun3g03173 455 MobiDBLite consensus disorder prediction 365 383 - -
Viun3g03173 455 SUPERFAMILY DNA-binding domain 173 242 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03173 Viun-Chr3 38228767 38233862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03173 44 455 AP2-EREBP Transcription Factor Family AT5G10510 50.685 3.85e-137 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Viun3g03173 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03173 K09285 - gmx:100814405 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01337 2 24011823 24016597 Viun3g03173 3 38228767 38233862 PCT