Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03171 ATGGAGAAAGTAGAGAAAAAGGGTAAAGATACGAAAGAAAAGAAATGGACGCGGAAACTGGAGTTACCGTCGATAATGGGGAACCCGAAGAAAGAGGTTGCATCTGACGACGACGTATTGACGTCGCCGAGGGATGTATTTGGGGTTCCCGTTTCGGGAACGGATTCGGACAGCACGGGGAGTAGCAACTATGAAGTGCTTGCATCGCCCGGATTAGTCGCCAATCGGGGCCAAGTGAGAGACGCGCAAACCCAGCAATGGAAGACGATGATCGACGTGTTGAGGTTCAAGTCCGTTAGAAGATTCTCCACGATTCCTCTGCTTGGGGCGAGTTACGAGATCTCGCGCCGGAGCCTGAGGAACAAGTTGGCGCGTATTCGACCCGCCAGTGACGACGATGATTTGGATTCTTGTATTGACATTGACGGCATTGCCACCAAGCCTTCTTGGAAGAACTTCAATTACGCTGACCTCGTCGCTGCAACCGACGATTTCAACCCAAAGAACATGATCGGAAAGGGTGGTCATGCTGAAGTGTACAAAGGAAGCTTACCGGATGGTCGAGTTGTAGCAGTTAAGAGGCTAATGAGAAGTGAAAAGGACATTGAGGACACAGCTGGTGATTTCTTGTCAGAGCTTGGAATCATCGCTCACATTAACCACCCAAATGCAACACGCTTGATAGGGTTTGGGATCGACCAAGGTCTCTATTTTGTTCTACAATTGGCCCCACATGGCAGCCTTGCCTCTCTGCTCTTTGGACCTCAATGTCTGGAGTGGAATAGAAGGTTTAAAGTGGCTGTTGGGGTTGCAAAAGGATTGCAGTATCTCCACCACGATTGCCCAAGAAGAATCATTCACAGAGACATCAAAGCCTCAAATATATTACTCAACAACGATGATGAAGCTGAGATATCAGACTTTGGATTGGCAAAGTGGCTCCCAGATAAGTGGGCTCACCATGTTGTCTTCCCCATAGAAGGCACATTTGGATATTTAGCTCCGGAGTACTTCATGCATGGAATAGTTGATGAGAAGACTGATGTGTTTGCATTTGGGGTTTTGTTACTCGAGCTCATAACAGGTCGTCGTGCAGTTGATTCAAATAGTAGGGAGAGTCTTGTGATCTGGGCCAAACCACTTCTGGATGCAAAGGTGGTGAAAGAATTGGTAGACCCCAGATTAAAAGCTAATTATGATCTGGCAGAAATGAAGTGTTGCATGGCAACGGCTTCCTTGTGCATCCATCACATGTCCTCTAAGCGGCCATACATGGATCAGGTTGTGCAGCTACTGAAAGGAGAAGAGGTGGCAGTAGAACTGAATCACAACTCACCTACTCCGAGATCACTGTTGATAGATGCATGTGACCTGGAAGATTACACTTGCTCTAACTATTTGAACGACCTCAATCGCCACAAGCAATTGCTGATGGAGTGA 1440 0.4743 MEKVEKKGKDTKEKKWTRKLELPSIMGNPKKEVASDDDVLTSPRDVFGVPVSGTDSDSTGSSNYEVLASPGLVANRGQVRDAQTQQWKTMIDVLRFKSVRRFSTIPLLGASYEISRRSLRNKLARIRPASDDDDLDSCIDIDGIATKPSWKNFNYADLVAATDDFNPKNMIGKGGHAEVYKGSLPDGRVVAVKRLMRSEKDIEDTAGDFLSELGIIAHINHPNATRLIGFGIDQGLYFVLQLAPHGSLASLLFGPQCLEWNRRFKVAVGVAKGLQYLHHDCPRRIIHRDIKASNILLNNDDEAEISDFGLAKWLPDKWAHHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRRAVDSNSRESLVIWAKPLLDAKVVKELVDPRLKANYDLAEMKCCMATASLCIHHMSSKRPYMDQVVQLLKGEEVAVELNHNSPTPRSLLIDACDLEDYTCSNYLNDLNRHKQLLME 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03171 479 MobiDBLite consensus disorder prediction 1 20 - -
Viun3g03171 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
Viun3g03171 479 MobiDBLite consensus disorder prediction 1 41 - -
Viun3g03171 479 ProSiteProfiles Protein kinase domain profile. 165 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03171 479 SUPERFAMILY Protein kinase-like (PK-like) 149 444 IPR011009 -
Viun3g03171 479 ProSitePatterns Protein kinases ATP-binding region signature. 171 193 IPR017441 GO:0005524
Viun3g03171 479 PANTHER OS08G0249100 PROTEIN 36 442 IPR046958 -
Viun3g03171 479 Gene3D Phosphorylase Kinase; domain 1 138 240 - -
Viun3g03171 479 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 244 446 - -
Viun3g03171 479 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 140 242 - -
Viun3g03171 479 Gene3D Transferase(Phosphotransferase) domain 1 244 446 - -
Viun3g03171 479 Pfam Protein kinase domain 167 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03171 479 SMART serkin_6 165 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03171 Viun-Chr3 38213885 38216782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03171 125 455 Trihelix Transcription Factor Family AT5G38560 40.936 1.66e-70 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Viun3g03171 Pkinase 1e-38 CL0016