LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g03151	ATGGACGGGCTTAACAACCAAAACAGGCCTAATGATCTGGACGGGTCTGACAACTCTGATAAGAATGACTATCTAAACGGACGAGCCTACAATTCGGACAAGATTAATGACCTAAACAAGAATTACAACCCTAATGGACCCAACGACCCGGATGGGCCCGACGACCTGGACGAGCCCGACGATCAAGATGAGCCAAACTATTCAAATCGACCGGAGGAGCCAAACGACCCGGAGAAGCATTACAGTTCGGATGGGCCCGTTCACGTCGTAGGCTCCGTCAAGGTCGTATGGCTCGTTCGGGTTGTTGAGACTGTTTGGGTTGTTTTGGTCATCAAGTCCGTCCACGTTGTATGGGTCGTCGAGCCCGTCCAAGTTGTCCGGATCGTCAGTCTCGTATGGGTCGTTCAGGTCATCTGGGATTGTCCGATTCGTCAGGCTCGTCTGAATTTAAGTGAGTTCGAAAGTTCTGGCGTAACATTTAATGACCCTGAAGTTAAACTGCATATAGAAAAGAAGCAGATCACAGTGCAAAATGGCATCATTCGTGTAACTTTCTCAAATCCAGAGGGCACTATCCTTGGAATATCATATAATGGAATAAACAATGTGCTTGAAGGTCGCAATAACTTCAATAACAGAGGGTATTTTGACATTGTCTGGAATTCACCAGGAGCCCCTTCAAAACTTTGGGGAATTCAAGGGAATAGATTTTCAGTTATAGAGGCCAACGAGAATGAAATAGAACTTTCGTTTTCCAGAACGTGGAACAAGGACGACTCAAGTCCACCCTTAAACATAGACAAAAGATACATTTTACGAAGAGGTAGTTCAGGATTATACATATACGCTATATTTGAGCATCCTGAAGATTTTCCTGCAATGGAGATTGATCACATTAGGATTGTTTTCAAGCTGCAGAAGGACAGGTTCCGGTACATGGCTATAGCAGATGATAGGCAGCGACTGATGCCAACAGCAGAAGATAGATCTACAGGGCAACGCCTTGATTACGATGAAGCTGCTCTGATCACCAATCCTAGTAACCCTCAACTTCAAGGAGAGGTTGATGACAAATATCAGTACTCTTGTGAGAACAAAGACAATAAAGTTCATGGGTGGATTAACTTGGACTCCAAGACCAATAAGTCAGTGGGCTTCTGGATGATCACACCAACTAATGAGTTTCGTAGTGGTGGCCCAACTAGGCAAGGCCTTACTTCTCACGTTGGCCCTGTCACCCTTAATATACTCCATACCACTCACTACTCTGGGAAGGAAGTAACCATGACATTGCACGAAGGGGACCCCTTCAAGAAAGTTTATGGTCCCGTTTTTGTATATCTCAACTCGGTTTCTAGGGTTCATGATTCAGAAAAAGTCCTCTGGAGTGATGCCGTACAACAGCTATCAGAGGAAATCACTAGATGGCCTTATGATTTCCCTAAATCAGAGGATTTTGTCCCTACAAATAAAAGGGGGAGAGTGGAAGGAGAATTACTCGTTCAAGACAGACACATTAAAGGAGGGAAATTTTTGTATGGCCAAAATGCCTACATTGGTTTGGCTCTTCCTGGAGATGTGGGATCATGGCAGAGACAAAGCAAGGGTTACCAATTCTGGACTCGAGCTGATAAACTTGGCCACTTCACAATTGCAAATATTGTTCCAGGGGACTACAATTTATATGCATGGATTCCTGGTATTTTTGGAGACTATAAATATAACACTACCATAACCATAACACCAGGATCTATCATCCAATTGGGTTCACTCATATACAATCCTCCGAGAAATGGACCAACCGTATGGGAAATTGGAATCCCAGATCGCTCTGCTGCAGAGTTCCACGTTCCAAATCCTTATCCTAACCTCATAAACCGATTATACATTGGAAAACCATTACACAATTTTAGACAATATGGAATATGGAAGCGTTACAACGAGTTATATCCAAATGAGGACCTCACTTACACTGTTGGTGTGAGTGATTATAGTAAAGACTGGTTTTATGCCCAGGTTCCCAGGAACATAGGAAACAACACATTTCATCCAACAGTATGGGAGATTAAATTCCATCTCCCATTTGTCATGAGAGGCATCTACACTCTGCGACTTGCATTGGCCTCAGCTACACGTTCTAACTTGATGGTTAGGTTTAACAACCCTGTGGCTCGTCCTCCACACTTTTCTACGGGAGTAATTGGTCAAGATAATGCAGTAGCGAGACATGGCATCCATGGATTGTATTGGGCTTATAGTATTGAAGTAGAAAGCAATGTGTTGGTGGAAGGAAGCAACATCATGTATCTGAGGCAAGCAAAATGTACGAGTCCTTTTCAAGGCATTATGTATGACTACATCCGTTTGGAAAGACCAGAAACATAA	2385	0.4348	MDGLNNQNRPNDLDGSDNSDKNDYLNGRAYNSDKINDLNKNYNPNGPNDPDGPDDLDEPDDQDEPNYSNRPEEPNDPEKHYSSDGPVHVVGSVKVVWLVRVVETVWVVLVIKSVHVVWVVEPVQVVRIVSLVWVVQVIWDCPIRQARLNLSEFESSGVTFNDPEVKLHIEKKQITVQNGIIRVTFSNPEGTILGISYNGINNVLEGRNNFNNRGYFDIVWNSPGAPSKLWGIQGNRFSVIEANENEIELSFSRTWNKDDSSPPLNIDKRYILRRGSSGLYIYAIFEHPEDFPAMEIDHIRIVFKLQKDRFRYMAIADDRQRLMPTAEDRSTGQRLDYDEAALITNPSNPQLQGEVDDKYQYSCENKDNKVHGWINLDSKTNKSVGFWMITPTNEFRSGGPTRQGLTSHVGPVTLNILHTTHYSGKEVTMTLHEGDPFKKVYGPVFVYLNSVSRVHDSEKVLWSDAVQQLSEEITRWPYDFPKSEDFVPTNKRGRVEGELLVQDRHIKGGKFLYGQNAYIGLALPGDVGSWQRQSKGYQFWTRADKLGHFTIANIVPGDYNLYAWIPGIFGDYKYNTTITITPGSIIQLGSLIYNPPRNGPTVWEIGIPDRSAAEFHVPNPYPNLINRLYIGKPLHNFRQYGIWKRYNELYPNEDLTYTVGVSDYSKDWFYAQVPRNIGNNTFHPTVWEIKFHLPFVMRGIYTLRLALASATRSNLMVRFNNPVARPPHFSTGVIGQDNAVARHGIHGLYWAYSIEVESNVLVEGSNIMYLRQAKCTSPFQGIMYDYIRLERPET	794

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g03151	794	CDD	RGL4_N	165	452	-	-
	Viun3g03151	794	Gene3D	-	166	463	IPR014718	GO:0030246
	Viun3g03151	794	Gene3D	-	487	588	-	-
	Viun3g03151	794	Pfam	Polysaccharide lyase family 4, domain II	515	586	IPR029413	-
	Viun3g03151	794	Pfam	Rhamnogalacturonate lyase family	161	355	IPR010325	-
	Viun3g03151	794	MobiDBLite	consensus disorder prediction	63	83	-	-
	Viun3g03151	794	PANTHER	RHAMNOGALACTURONATE LYASE FAMILY PROTEIN	170	793	-	-
	Viun3g03151	794	Pfam	Polysaccharide lyase family 4, domain III	601	789	IPR029411	-
	Viun3g03151	794	CDD	RGL4_C	603	790	-	-
	Viun3g03151	794	MobiDBLite	consensus disorder prediction	1	85	-	-
	Viun3g03151	794	SUPERFAMILY	Galactose mutarotase-like	174	464	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Viun3g03151	794	SUPERFAMILY	Galactose-binding domain-like	598	790	IPR008979	-
	Viun3g03151	794	SUPERFAMILY	Starch-binding domain-like	509	589	IPR013784	GO:0030246
	Viun3g03151	794	Gene3D	-	599	790	-	-
	Viun3g03151	794	CDD	RGL4_M	491	591	IPR029413	-
	Viun3g03151	794	MobiDBLite	consensus disorder prediction	32	46	-	-
	Viun3g03151	794	FunFam	Rhamnogalacturonate lyase B	488	588	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g03151	Viun-Chr3	37839556	37853304	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g03151	165	792	Polysaccharide Lyase	AT1G09910	52.923	0.0	699

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g03151	K18195		-	gmx:100792575	1093.57