Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03150 ATGAAGGGGAGGGTGGCGGGTTGGAGGAGCCAGAGGGTTTTCTTGCTTTTCTGGTTTGGAATTACCCTGCGCTTGTTTTTCTTACTCGGTGCCTGTTCTGAGAAGACAACAAGAAAACCTTTGAGGGAGACCCGCCCCACGCAACAGACAACTTCTAATCCTGGGATCATTCTGACTACACAGAACCGTCAACAGGTGGTGATTGACAATGGTATTGTTTCCGTCAAATTTTCAAGACCTGAGGGTTACATCCTTGGAATGTCATACAAAGGAATTGACAATATACTCGAAGATGACAACGAAGAACAAGATCGAGGGTACCTGGATGTCGTTTGGAATACGCCAGGAAAGTCTAGTAATTTTCAGAGAATCTTCGGGACAAATTTTACAGTTATAGCAGCTGACGACAATACCGTTGAGCTCTCATTTTCAAGAACATGGACACCGTCCATGAATGGCTCGAGTGTCCCCATGAACATTGACATAAGATACATTTTGCGAAGTGGTGATTCAGGATTTTATGCATATGCAATATTTGATCGCCCTGAAGGATGGCCTGCGGTGGAGATTGACCAAATTAGGATCGTTTTCAAACTCAAATCCAAGTTCAATTATATGGCGATGTCGGATGAAAGGCAAAGAACCATGCCAACAAGGAGAGATAGAGAAACTGGTCAAGTCTTGGCATACCCTGAAGCAGTTCTATTAACGAGACCAGCGAATCCAGAATTCAGAGGAGAGGTGGATGACAAATACCAGTACTCATGTGAAAACAGGGATAACACTGTTCATGGATGGGTGAGTGTTGATTCCAATGCACCCGTGGGTTTCTGGGTGATAACCCCAAGCAACGAGTTCCGCAATGCTGGCCCCATCAAGCAAGACCTTACTTCACACGTTGGCCCCATTACCCTCGCGATGTTTGTGAGCACTCACTATGCTGGCAAGGAGGTAACCCTGTCCTTTCAAGAAGGGGAGGCTTACAAAAAAGTTTTCGGCCCTGTGTTCGCCTACGTTAACTCTGCTTCACGCGAGGATGGTACACTATCCCTCTGGTCAGACGCTGCGCAGCAGCAAGCCAAAGAAGAAAGAAGTTGGCCGTATGAATTTCCTAAATCAGTGGATTTCATTCCACCCAGTCAAAGGGGGATAGTTTTGGGAAGACTACTAGTGAAAGATAGTTACTTCAGAGGAGGTAGACTTCTGTATGCTGACAACGCTTACGTTGGTCTAGCTTTACCTGGAGAAGCAGGGTCATGGCAAATAGAAAGCAAGGGCTATCAGTTCTGGACTCAAGCTGATACAAAGGGTTTTTTCCTGATTAATAATATTGTGCCCGGTGACTATAATTTGTATGCATGGGTTCCTGGCTTCATCGGTGATTACAGATATAATGTTACAATCACCATCCCAATGGGAGGAGGAGTCATCACATTGGATTCACTTGTGTTTGTTCCACCAAGAAGTGGACCAACCATGTGGGAAATTGGGTTCCCAGATCGCACGGCTGCAGAATTCAATATACCAGACCCTTACCCTACGCTCATGAATAAATTATACAACGAACGGCACAGTGACAAGTTTAGGCAATACGGGTTGTGGGAGCGTTACACTGATTTATATCCAAATGATGATCTTGTTTACACTGTTGGTGTTAGCAAGTATAACAAGGATTGGTTTTTCGCTCACGTTTCAAGAAACGCAGGAAACAAGACATACCAGCCAACGACATGGCAGATTATATTTGAACATCCAAATGAAGTAGTAAGAGGAAACTACACATTGCAAGTGGCCTTGGCATGTACCAATGATGCTGACCTGCAGATTCGTTTGAACGACCCTGAAGCAAATCCCCCAGACTTTGCAACTGGGAAAATCGGAGGAGATAGTGCGATAGCAAGACATGGTGTGCATGGATTGCATAGGCTATTCAGCATTAGTGTAGGAAGTGATCGAATTTTGAAAGGAAGGAACACGATCTATCTGAAGCAGGCAAGATCCAGGAATCCTTTTCAAGGAGTAATGTATGATTATATCCGTTTAGAACGACCTCAATTGACAGTCATGTGA 2070 0.4464 MKGRVAGWRSQRVFLLFWFGITLRLFFLLGACSEKTTRKPLRETRPTQQTTSNPGIILTTQNRQQVVIDNGIVSVKFSRPEGYILGMSYKGIDNILEDDNEEQDRGYLDVVWNTPGKSSNFQRIFGTNFTVIAADDNTVELSFSRTWTPSMNGSSVPMNIDIRYILRSGDSGFYAYAIFDRPEGWPAVEIDQIRIVFKLKSKFNYMAMSDERQRTMPTRRDRETGQVLAYPEAVLLTRPANPEFRGEVDDKYQYSCENRDNTVHGWVSVDSNAPVGFWVITPSNEFRNAGPIKQDLTSHVGPITLAMFVSTHYAGKEVTLSFQEGEAYKKVFGPVFAYVNSASREDGTLSLWSDAAQQQAKEERSWPYEFPKSVDFIPPSQRGIVLGRLLVKDSYFRGGRLLYADNAYVGLALPGEAGSWQIESKGYQFWTQADTKGFFLINNIVPGDYNLYAWVPGFIGDYRYNVTITIPMGGGVITLDSLVFVPPRSGPTMWEIGFPDRTAAEFNIPDPYPTLMNKLYNERHSDKFRQYGLWERYTDLYPNDDLVYTVGVSKYNKDWFFAHVSRNAGNKTYQPTTWQIIFEHPNEVVRGNYTLQVALACTNDADLQIRLNDPEANPPDFATGKIGGDSAIARHGVHGLHRLFSISVGSDRILKGRNTIYLKQARSRNPFQGVMYDYIRLERPQLTVM 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03150 689 CDD RGL4_C 494 682 - -
Viun3g03150 689 Pfam Polysaccharide lyase family 4, domain II 405 470 IPR029413 -
Viun3g03150 689 FunFam Rhamnogalacturonate lyase B 378 477 - -
Viun3g03150 689 Pfam Polysaccharide lyase family 4, domain III 492 681 IPR029411 -
Viun3g03150 689 Gene3D - 377 473 - -
Viun3g03150 689 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 59 685 - -
Viun3g03150 689 CDD RGL4_N 65 343 - -
Viun3g03150 689 Gene3D - 489 682 - -
Viun3g03150 689 SUPERFAMILY Galactose mutarotase-like 59 344 IPR011013 GO:0003824|GO:0005975|GO:0030246
Viun3g03150 689 Gene3D - 57 349 IPR014718 GO:0030246
Viun3g03150 689 Pfam Rhamnogalacturonate lyase family 54 248 IPR010325 -
Viun3g03150 689 SUPERFAMILY Starch-binding domain-like 378 469 IPR013784 GO:0030246
Viun3g03150 689 SUPERFAMILY Galactose-binding domain-like 489 682 IPR008979 -
Viun3g03150 689 CDD RGL4_M 381 482 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03150 Viun-Chr3 37826391 37831622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03150 65 684 Polysaccharide Lyase AT1G09890 55.769 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03150 K18195 - gmx:100776664 1177.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01360 2 24244784 24250487 Viun3g03150 3 37826391 37831622 PCT