Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03138 ATGGAGCTTTCTCAGCTTGGTTTCTTAGATGAATTGGTGGCTCCAAGAAGAGAGACATGGAATGCTCTGTCCAGTGGGTTCTTGGAGCTATTGTCTAATGGTTGGAGTTTTGACACTTTTCTTGAGAACCCATCTTTCCCCACCTCTAACTCTCTGTTTGCTGCATTTTCAACACCCATAGACCGCAGATTTGAATGCCCTTTCACCAATGAACTACCACCATACCCTTTTCCTGATGCCTTCACAATGCCATTGCCGCACCTTCACCCTGCCAACGATGATCCCCCACCTCCACTTCCACCCACACTGGAGGATGAAGATGTTGCCTTTTATGACAACAACAACAACAACTTTGAAGAAATCAAGAGTGTCTGCAAAGTTGAGGAACAAGGTGTTGAGAATCCACAAGGCACAGAGATTCCACTCTTCAACACAGGCATGTCTGATGATGCAGAGAGGAAACAGAAGTCCAAAAAGCTAGAGGGACAGCCCTCAAAGAATCTCATGGCAGAAAGGAGGAGAAGAAAGCGTCTCAATGACCGTCTTTCCATGCTTAGGTCAATAGTCCCCAAGATCAGCAAGATGGACAGGACCTCTATTCTTGGGGATACTATAGACTACATGAAAGAGCTCTTGGAAAGGATTGGTAAGTTGCAAGAAGAAGAGGGGGAAGAGGGCTCAAGTCAGATTAATCTGTTGGGAATTTCAAAAGACCAAGTGAAACCAAATGAAGCAATTGTAAGAAACTCCCCCAAGTTTGATGTTGAAAGGAGAGACCAGGACACCAGGATCAGCATTTGCTGTGCCACAAAGCCTGGATTGCTACTATCAACCATCAATACATTAGATGCATTAGGCCTTGAGATTCAGCAATGTGTTGTAAGCAGCTTCAATGACTTTTCAGTGGAAGCATCTTGTTCTGAGGTGAACAGAGAAATTGCGTTAGCCCTGAGGAGATAA 960 0.4479 MELSQLGFLDELVAPRRETWNALSSGFLELLSNGWSFDTFLENPSFPTSNSLFAAFSTPIDRRFECPFTNELPPYPFPDAFTMPLPHLHPANDDPPPPLPPTLEDEDVAFYDNNNNNFEEIKSVCKVEEQGVENPQGTEIPLFNTGMSDDAERKQKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEGEEGSSQINLLGISKDQVKPNEAIVRNSPKFDVERRDQDTRISICCATKPGLLLSTINTLDALGLEIQQCVVSSFNDFSVEASCSEVNREIALALRR 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03138 319 MobiDBLite consensus disorder prediction 136 166 - -
Viun3g03138 319 Pfam Helix-loop-helix DNA-binding domain 168 211 IPR011598 GO:0046983
Viun3g03138 319 MobiDBLite consensus disorder prediction 149 166 - -
Viun3g03138 319 SMART finulus 168 217 IPR011598 GO:0046983
Viun3g03138 319 Gene3D - 170 245 IPR036638 GO:0046983
Viun3g03138 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Viun3g03138 319 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 80 311 - -
Viun3g03138 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 224 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03138 Viun-Chr3 37719656 37721334 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03138 9 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 43.519 1.08e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g03138 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03138 - - gmx:100790319 387.497