Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03136 ATGGAGCTTTCTCAGCTTGGTTTCTTAGATGAATTGGTGGCTCCAAGAAGAGAGACATGGAATGCTCTGTCCAGTGGGTTCTTGGAGCTATTGTCTAATGGTTGGAGTTTTGACACTTTTCTTGAGAACCCATCTTTCCCCACCTCTAACTCTCTGTTTGCTGCATTTTCAACACCCATAGACCGCAGATTTGAATGCCCTTTCACCAATGAACTACCACCATACCCTTTTCCTGATGCCTTCACAATGCCATTGCCGCACCTTCACCCTGCCAACGATGATCCCCCACCTCCACTTCCACCCACACTGGAGGATGAAGATGTTGCCTTTTATGACAACAACAACAACTTTGAAGAAATCAAGAGTGTCTGCAAAGTTGAGGAACAAGGTGTTGAGAATCCACAAGGCACAGAGATTCCACTCTTCAACACAGGCATGTCTGATGATGCAGAGAGGAAACAGAAGTCCAAAAAGCTAGAGGGACAGCCCTCAAAGAATCTCATGGCAGAAAGGAGGAGAAGAAAGCGTCTCAATGACCGTCTTTCCATGCTTAGGTCAATAGTCCCCAAGATCAGCAAGATGGACAGGACCTCTATTCTTGGGGATACTATAGACTACATGAAAGAGCTCTTGGAAAGGATTGGTAAGTTGCAGGAAGAAGAGGCGGAAGAGGGCTCAAGTCAGATTAATCTGTTGGGCATTTCAAAAGACCAAGTGAAACCAAATGAAGCAATTGTAAGAAACTCCCCCAAGTTTGATGTTGAAAGGAGAGACCAGGACACCAGGATCAGCATTTGTTGTGCTACAAAGCCTGGATTGCTACTATCAACCGTCAATACATTAGAAGCATTAGGCCTTGAGATTCAGCAATGTGTTGTAAGCAGCTTCAATGACTTTTCAGTGGAAGCATCTTGTTCTGAGGTAGGTGAACAGAGAAATTGCGTTAGCCCTGAGGAGATAAAACAATCACTATTCAGAAATGCAGGGTTTGGTGGGAAATGTCTCAAGGAGAAAGATGGAAAATTGATAAAACAATTTGCAGATGGTGTTAAAGAAGCAACTTTCCTTCTTTAG 1074 0.4395 MELSQLGFLDELVAPRRETWNALSSGFLELLSNGWSFDTFLENPSFPTSNSLFAAFSTPIDRRFECPFTNELPPYPFPDAFTMPLPHLHPANDDPPPPLPPTLEDEDVAFYDNNNNFEEIKSVCKVEEQGVENPQGTEIPLFNTGMSDDAERKQKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEAEEGSSQINLLGISKDQVKPNEAIVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIQQCVVSSFNDFSVEASCSEVGEQRNCVSPEEIKQSLFRNAGFGGKCLKEKDGKLIKQFADGVKEATFLL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03136 357 Pfam Helix-loop-helix DNA-binding domain 167 210 IPR011598 GO:0046983
Viun3g03136 357 SMART finulus 167 216 IPR011598 GO:0046983
Viun3g03136 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 222 IPR036638 GO:0046983
Viun3g03136 357 MobiDBLite consensus disorder prediction 135 165 - -
Viun3g03136 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Viun3g03136 357 MobiDBLite consensus disorder prediction 148 165 - -
Viun3g03136 357 Gene3D - 169 243 IPR036638 GO:0046983
Viun3g03136 357 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 82 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03136 Viun-Chr3 37703035 37704774 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03136 9 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 46.110 6.35e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g03136 HLH 7.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03136 - - gmx:100790319 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01376 2 24383120 24385108 Viun3g03136 3 37703035 37704774 PCT