Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03135 ATGGAGCTTTCTCAGCTTGGTTTCTTAGATGAATTGGTGGCTCCAAGAAGAGAGACATGGAATGCTCTGTCCAGTGGGTTCTTGGAGCTATTGTCTAATGGTTGGAGTTTTGACACTTTTCTTGAGAACCCATCTTTCCCCACCTCTAACTCTCTGTTTGCTGCATTTTCAACACCCATAGACCGCAGATTTGAATGCCCTTTCACCAATGAACTACCACCATACCCTTTTCCTGATGCCTTCACAATGCCATTGCCGCACCTTCACCCTGCCAACGATGATCCCCCACCTCCACTTCCACCCACACTGGAGGATGAAGATGTTGCCTTTTATGACAACAACAACAACTTTGAAGAAATCAAGAGTGTCTGCAAAGTTGAGGAACAAGGTGTTGAGAATCCACAAGGCACAGAGATTCCACTCTTCAACACAGGCATGTCTGATGATGCAGAGAGGAAACAGAAGTCCAAAAAGCTAGAGGGACAGCCCTCAAAGAATCTCATGGCAGAAAGGAGGAGAAGAAAGCGTCTCAATGACCGTCTTTCCATGCTTAGGTCAATAGTCCCCAAGATCAGCAAGATGGACAGGACCTCTATTCTTGGGGATACTATAGACTACATGAAAGAGCTCTTGGAAAGGATTGGTAAGTTGCAGGAAGAAGAGGCGGAAGAGGGCTCAAGTCAGATTAATCTGTTGGGCATTTCAAAAGACCAAGTGAAACCAAATGAAGCAATTGTAAGAAACTCCCCCAAGTTTGATGTTGAAAGGAGAGACCAGGACACCAGGATCAGCATTTGTTGTGCTACAAAGCCTGGATTGCTACTATCAACCGTCAATACATTAGAAGCATTAGGCCTTGAGATTCAGCAATGTGTTGTAAGCAGCTTCAATGACTTTTCAGTGGAAGCATCTTGTTCTGAGGTGAACAGAGAAATTGCGTTAGCCCTGAGGAGATAA 957 0.4493 MELSQLGFLDELVAPRRETWNALSSGFLELLSNGWSFDTFLENPSFPTSNSLFAAFSTPIDRRFECPFTNELPPYPFPDAFTMPLPHLHPANDDPPPPLPPTLEDEDVAFYDNNNNFEEIKSVCKVEEQGVENPQGTEIPLFNTGMSDDAERKQKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEAEEGSSQINLLGISKDQVKPNEAIVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIQQCVVSSFNDFSVEASCSEVNREIALALRR 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03135 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 222 IPR036638 GO:0046983
Viun3g03135 318 SMART finulus 167 216 IPR011598 GO:0046983
Viun3g03135 318 MobiDBLite consensus disorder prediction 135 165 - -
Viun3g03135 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Viun3g03135 318 MobiDBLite consensus disorder prediction 148 165 - -
Viun3g03135 318 Gene3D - 169 243 IPR036638 GO:0046983
Viun3g03135 318 Pfam Helix-loop-helix DNA-binding domain 167 210 IPR011598 GO:0046983
Viun3g03135 318 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 79 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03135 Viun-Chr3 37702828 37704774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03135 9 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 44.272 7.32e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g03135 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03135 - - gmx:100790319 402.134