Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03131 ATGTCTCAGCCTCTTTTGGTTACTGAAGATGAAGGGCAGACCACTGTCTCAATGGTAGCGTCTGCATCTTCACCATCGATGGAGTGTTTCACCCCACATGAGGCTAGATTGAAAGAACGCAATTACCTGGGATTGGCAGATTGCTCTTCGGTGGAGAGTTCTGCTGTCCCGAGCTTGTCTGGTGAGAACAAGAACCTGAATTTGAAGGCTACTGAGTTGAGGCTGGGCCTTCCTGGATCCCAGTCACCTGAAAGGGATCCAGATCTTTTCCCATTGACCTCAGCAAAACTTGACGAGAAGCCACTGTTCCCTTTGCTTCCTACAAAGGATGGAATCTTCACATTGTCCCAGAAAACTGTGGTCTCCGGCAACAAAAGAGGTTTTGCTGACACAATGGACACTGAGTTTCCTGGAAATGCAGGGTTAAACATGATGCTATCACCTAAAGCTTCTGGGATTCAGCCATCCATAGTGAAAGAAGTACCAAGCAAGGTATTACAGGAACGTTCTTCTGCAGCAAATGGAACTGGTCTTAACCATTCAGGAACTTCTATCAGTGGCAGTGCACCTGCTTCCAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCATTGGCCACCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCAAGTCCAGTCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTGAGGAAAGTAGATCTAAGAAATTATACAACATACCAGGAACTGTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTCACTCTAGGTCAATGTGGTTCCCATGGAGTGCCAGGAAGAGAAATCTTGAGTGAGAGCAAGCTGAAGGATCTCCTGCATGGTTCGGAATATGTACTGACTTATGAAGATAAAGATGGTGACTGGATGCTTGTGGGAGATGTACCATGGGATATGTTCATTGAGACATGCAAAAGGCTAAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCAAGGGCCATGGAAAAGTCCAGGAGCAGGAGCTAG 1047 0.4604 MSQPLLVTEDEGQTTVSMVASASSPSMECFTPHEARLKERNYLGLADCSSVESSAVPSLSGENKNLNLKATELRLGLPGSQSPERDPDLFPLTSAKLDEKPLFPLLPTKDGIFTLSQKTVVSGNKRGFADTMDTEFPGNAGLNMMLSPKASGIQPSIVKEVPSKVLQERSSAANGTGLNHSGTSISGSAPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPSPVALFVKVSMDGAPYLRKVDLRNYTTYQELSSALEKMFSCFTLGQCGSHGVPGREILSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFIETCKRLKIMKGSDAIGLAPRAMEKSRSRS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03131 348 FunFam Auxin-responsive protein 223 340 - -
Viun3g03131 348 MobiDBLite consensus disorder prediction 165 192 - -
Viun3g03131 348 MobiDBLite consensus disorder prediction 167 191 - -
Viun3g03131 348 Pfam AUX/IAA family 71 339 IPR033389 -
Viun3g03131 348 SUPERFAMILY CAD & PB1 domains 225 329 - -
Viun3g03131 348 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 335 IPR003311 GO:0005634|GO:0006355
Viun3g03131 348 Gene3D - 225 341 - -
Viun3g03131 348 ProSiteProfiles PB1 domain profile. 228 332 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03131 Viun-Chr3 37632930 37637630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03131 231 327 B3 DNA Binding Superfamily AT2G46530 36.082 3.81e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun3g03131 AUX_IAA 7.9e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03131 K14484 - gmx:100789251 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01380 2 24412045 24416456 Viun3g03131 3 37632930 37637630 PCT