Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03111 ATGACAGAGTACCGCTCGCCGCCGACGATGAATCTCTGGACCGACGATAACTCTTCCGTCATGGAGGCCTTCATGAGCTCCTCCGACTTCTCATCCCTCTGGCTGCCCACGCCTCAATCCGCTGCCTCTACCACCACTCCGGGAGCCGACGCCGCCAGAGCCCCGCCGCCACCTCCGCCGTCCCAGTCTCAGTCCCTGCTTAACCAGGAGACCTTACAGCAACGGCTGCAAACTCTGATCGAAGGTGCCAGAGAGAGCTGGACCTACGCCATTTTCTGGCAATCTTCTTATGACTACTCCTCCGGCGCTTCCCTTCTCGGTTGGGGCGACGGATACTACAAGGGGGAGGAGGACAAAGGAAAAGGAAAAGCCCCCAAGGAGACGTCGTCCGCGGAGCAGGACCACCGTAAGAAGGTTCTCCGCGAGCTCAATTCCTTGATTTCCGGCCCTTCCGCTTCCGCTGATGACGTCGACGAAGAGGTATCTGACACCGAGTGGTTCTTTCTAGTGTCCATGACTCAGTCCTTTGTCAACGGCAGCGGCCTACCGGGCCAGGCTTTTTTTAATTCCAGCCCCGTTTGGGTCGCGGGGGGCGACCGGTTATCCGAATCGGCGTGCGAGCGGGCCCGCCAGGGGCAGGTCTTTGGGCTTCAGACTCTGGTCTGCATACCGTCCGCAAACGGCGTCGTTGAGCTGGCGTCTACGGAGGTGATTTTCCAGAACCCTGATCTCATGAACAAAGTGCGGGATTTGTTCAACTTCAGCAACCCCGACGCGGGTTCCTGGCCGTTGAATTGCGTTGCCACCGATCAGGGCGAAAACGACCCTTCCTCACTCTGGCTCAACCCTTCTTCCTCTATCGAAATCAAGGACACCTCTAACGCCGTTGCACCCGCTTCAGCAAATGCAACAGCGAAAACGATGCCGTTCGAAACCCCTGGTTCCAGCACTCTAACAGAAACCCCTAGTGCCGCAGCCGTCGCAGCAGCTCACGTCCCAAATCCCAAGAACCAGGGTTTCTTCCCGAGGGAATTGAACTTCTCCAACTCCTTAAAACCCGAATCCGGTGAAATTCTGAGCTTCGGAGAGAGCAAGAAGAGCTCTTACAATGGGAGTTACTTCCCCGCTGTTGCAGCTGAGGAGACCAACAAGAAGCGAAGGTCTCCTGTTTCTCGCAGCAGCATTGACGATGGAATGCTGTCCTTCACCTCCGGCGTCATTCTTCCGGCTTCGAATGTAAAATCGGGTGCTGGTGGTGGTGGTGGTGCCGGGGGCGGTGATTCCGAAAACTCGGATCTGGAGGCTTCCGTGGTGAAAGAGGCGGACAGCAGGGTGGTGGAACCGGAGAAAAGGCCCCGGAAGAGGGGTCGAAAGCCGGCGAACGGCAGAGAGGAGCCGCTGAATCACGTGGAAGCGGAGAGGCAGAGGAGGGAAAAGCTGAATCAAAGGTTCTATGCGCTTCGTGCGGTGGTTCCCAACGTGTCGAAGATGGACAAGGCGTCGCTCTTGGGCGATGCCATATCCTACATAAACGAGCTGAAGTCAAAGCTGAGTGAGCTTGAATCGGAGAAAGGGGAATTGGAGAAGCAATTGGATTCGGTGAAGAAGGAGCTTGAGCTGTCAACTAAAAACCCTTCTCCTCCTTCTCCCCCGCGTGGACCATCTCCATCTAACAAAGAAGCGAAGGAAACGACGACCAAGCTGATTGATTTGGAGGTAGAGGTGAAGATCATAGGGTGGGACGCTATGATAAGAATCCAATGCAGCAAGAAGAACCACCCTGCAGCAAGGTTGATGGCAGCGTTGAAGGACCTCGACCTGGACGTGCATCACGCCAGCGTCTCCGTGGTCAATGATTTGATGATCCAACAGGCCACCGTCAACATGGGAAACCGGTTTTACACGCAGGAACAGCTCCTGTCGGCGCTATCCTCCAAAATTGGCCATGCACTATAG 1956 0.5593 MTEYRSPPTMNLWTDDNSSVMEAFMSSSDFSSLWLPTPQSAASTTTPGADAARAPPPPPPSQSQSLLNQETLQQRLQTLIEGARESWTYAIFWQSSYDYSSGASLLGWGDGYYKGEEDKGKGKAPKETSSAEQDHRKKVLRELNSLISGPSASADDVDEEVSDTEWFFLVSMTQSFVNGSGLPGQAFFNSSPVWVAGGDRLSESACERARQGQVFGLQTLVCIPSANGVVELASTEVIFQNPDLMNKVRDLFNFSNPDAGSWPLNCVATDQGENDPSSLWLNPSSSIEIKDTSNAVAPASANATAKTMPFETPGSSTLTETPSAAAVAAAHVPNPKNQGFFPRELNFSNSLKPESGEILSFGESKKSSYNGSYFPAVAAEETNKKRRSPVSRSSIDDGMLSFTSGVILPASNVKSGAGGGGGAGGGDSENSDLEASVVKEADSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLSELESEKGELEKQLDSVKKELELSTKNPSPPSPPRGPSPSNKEAKETTTKLIDLEVEVKIIGWDAMIRIQCSKKNHPAARLMAALKDLDLDVHHASVSVVNDLMIQQATVNMGNRFYTQEQLLSALSSKIGHAL 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03111 651 FunFam Transcription factor bHLH13 457 531 - -
Viun3g03111 651 PANTHER MYC 22 646 IPR045084 GO:0003700|GO:0006355
Viun3g03111 651 MobiDBLite consensus disorder prediction 35 65 - -
Viun3g03111 651 MobiDBLite consensus disorder prediction 413 474 - -
Viun3g03111 651 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 467 533 IPR036638 GO:0046983
Viun3g03111 651 Gene3D - 456 543 IPR036638 GO:0046983
Viun3g03111 651 Pfam Helix-loop-helix DNA-binding domain 468 513 IPR011598 GO:0046983
Viun3g03111 651 Coils Coil 503 544 - -
Viun3g03111 651 MobiDBLite consensus disorder prediction 433 474 - -
Viun3g03111 651 SMART finulus 470 519 IPR011598 GO:0046983
Viun3g03111 651 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 464 513 IPR011598 GO:0046983
Viun3g03111 651 MobiDBLite consensus disorder prediction 538 565 - -
Viun3g03111 651 CDD bHLH_AtAIB_like 461 537 - -
Viun3g03111 651 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 72 252 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03111 Viun-Chr3 37471013 37473418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03111 1 648 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 56.567 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g03111 bHLH-MYC_N 5.4e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03111 K13422 - gmx:100790854 959.133