Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03109 ATGGCGTCCGATGCCCACACCGACAAGAACATTGTCTTCAGGAAACTCAAGGCCAAGTCTGAGAATAAGATGTGCTTCGATTGCAATGCGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTTCTCTGCATCGATTGCTCCGCCGTTCATCGCAGTCTCGGCGTGCACATCAGCTTCGTGAGGTCTACAAATTTAGACTCATGGAGTCCTGAGCAACTAAAGATGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAACAACATGGTTGGACTGATGGTGGCAAAATAGAGGCTAAATACACATCCAGGGCTGCGGATTTGTATAGGCAACTTCTTTCGAAGGAAGTGGCTAAGAGTATGGCTGAGGATGGAGGCTTGCCTTCATCACCTGTTGCTTCTCAGTCTTCCCAGGGTATTAATGGGCTTCCTGAAATCAGGACCAATGAAGTTCCAAAAGAAAACATTCTGGAGAAGCCTGAAAAGCCTGAGGCCACCTCTTCACCTAAGGCTTCTCACTCAGTAATTTCAAGTACTGTCAAGAAACCTATTGGGGGTAAAAAACCTGGGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGACAAGTGAGTCTATCTATGAGCAGAAGCCTGAGGAAACCCCTGCTCCTGTTCCATCCTCAACCAACAATATGCCTGCTGGACCATCTCTGACATCTCGGTTTGAGTATGTAGAAAATGTCCAATCATCTGAGTTGAATACTGGAGGTTCATCCGTGATGAGTCATGTGTCTCCACCAAAGTCATCAAGCTTTTTTGCAGACTTTGGAATGGATGGTGGATTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAATTCAGGAATCTGATGAGGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTTCATCATCCCAATTTTTTGGAGATCAGACCAAAGCTGCAGATTTGGACTCTCAAGCTTCTTTGTCTAAGTTTTCGGGTTCGACTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAAAGACAACGCCATTGATCTTTCTGCTAGTGACCTCATCAATCGATTATCTTTCCAGGCACAACAGGACCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGAAGATCAGCACATTAGCCTCCACATTGATGACGGATCTTCAGGACCGAATCCTCTAA 1212 0.4571 MASDAHTDKNIVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQLLSKEVAKSMAEDGGLPSSPVASQSSQGINGLPEIRTNEVPKENILEKPEKPEATSSPKASHSVISSTVKKPIGGKKPGKSGGLGARKLTKKTSESIYEQKPEETPAPVPSSTNNMPAGPSLTSRFEYVENVQSSELNTGGSSVMSHVSPPKSSSFFADFGMDGGFPKKSGPSSSKVQIQESDEARRKFSNAKSISSSQFFGDQTKAADLDSQASLSKFSGSTAISSADLFGDSKDNAIDLSASDLINRLSFQAQQDLSSLKNIAGETGKKISTLASTLMTDLQDRIL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03109 403 SUPERFAMILY ArfGap/RecO-like zinc finger 12 125 IPR037278 -
Viun3g03109 403 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Viun3g03109 403 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Viun3g03109 403 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Viun3g03109 403 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Viun3g03109 403 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Viun3g03109 403 MobiDBLite consensus disorder prediction 221 237 - -
Viun3g03109 403 MobiDBLite consensus disorder prediction 155 170 - -
Viun3g03109 403 CDD ArfGap_ArfGap2_3_like 8 123 - -
Viun3g03109 403 Pfam Putative GTPase activating protein for Arf 12 108 IPR001164 GO:0005096
Viun3g03109 403 MobiDBLite consensus disorder prediction 126 237 - -
Viun3g03109 403 MobiDBLite consensus disorder prediction 282 302 - -
Viun3g03109 403 Gene3D Arf GTPase activating protein 1 135 IPR038508 -
Viun3g03109 403 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Viun3g03109 403 MobiDBLite consensus disorder prediction 133 148 - -
Viun3g03109 403 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03109 Viun-Chr3 37434411 37440313 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03109 13 91 C2H2 Transcription Factor Family AT4G21160 46.250 1.16e-19 87.4