Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03102 ATGGCCGCTGTTGGAAACCCCAGAACGTGGATTCCATATATGAACAGCAAAGACTGTTCTCAAGGATTTTGCAGCTTGTACTGTCCACAGTGGTGTTACATAGTGTATCCTCCTCCTCCACCTTTTGAGTACCCTGATGATGATTCAAGCCCAAATTTCTCCCCTCTTGTCATTGCAATCATTGGTATTTTGGCCACTGCTTTTCTTCTGGTGAGTTACTACACTCTCATATCCAAGTACTGTGGCCCCAGAGGGTCTGCACGCAGAGACTCAAACGACGACTTCCAACCCACTCACAACCCCCCTCTCCAAGAACCATGGAACGCTTCAACCACGGGTCTTGACGAGGCTCTCATCAAATCCATTGCAGTTTTCAAGTACAAGAAAGGGGATGCAGGTTCTGTTGGAGTCACGGATTGTTCAGTTTGTCTCAGCGAGTTCGAAGACGACGAAAGTGTTCGACTTTTGCCAAAGTGCAGCCACGTTTTCCATGCCCCTTGCATCGACACTTGGCTCAAGTCTCACTCTAGCTGCCCCTTGTGTCGTGCTGCCATATTCACTTTCAACGCTTCTGTTCCTCGGGCTCACGCCCCAGAAGAAGATGCCCCTTCTTCGAGGAATGAAACTTCTTCTGAGAATGAAAGTGTTGGAAACGAGTACGGAGTGGTGGTGATGTTGGAAGAAGAAAGCATACACCATTCTCGGGCTTATCCAAAGCCTGCATTGCGTGCTTTCAGTGACTTGAGTAGTTTCCAGGGCAGACACAGAGTGATTGAGATAAGAGACGAAGTTTGTGAGTGTGAATCCGTTGGAAGGTCAGTGTCCATGGATCATTCGTTTCAAAGTGGTGTTTCTGTTGCTGATGTGTTGCGAATGCATGAAGAGGAAGATTCCCAAGTTGAAGGGTGTGGTTCTTCTTCTACTGAAGCTGGTCCATCAAAGAGATCACGCGGAGAGAGGTACAAAACAAGGGTTTTGCATTGTGTGTTGAGTCCAATTGCAATGAAGAGATCGTTTTCCAGCGACAGATTCTCAGTTACCAAAAGTAGCAGAGCAAGACAGGGAACTATACCCATCTGA 1080 0.4741 MAAVGNPRTWIPYMNSKDCSQGFCSLYCPQWCYIVYPPPPPFEYPDDDSSPNFSPLVIAIIGILATAFLLVSYYTLISKYCGPRGSARRDSNDDFQPTHNPPLQEPWNASTTGLDEALIKSIAVFKYKKGDAGSVGVTDCSVCLSEFEDDESVRLLPKCSHVFHAPCIDTWLKSHSSCPLCRAAIFTFNASVPRAHAPEEDAPSSRNETSSENESVGNEYGVVVMLEEESIHHSRAYPKPALRAFSDLSSFQGRHRVIEIRDEVCECESVGRSVSMDHSFQSGVSVADVLRMHEEEDSQVEGCGSSSTEAGPSKRSRGERYKTRVLHCVLSPIAMKRSFSSDRFSVTKSSRARQGTIPI 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03102 359 MobiDBLite consensus disorder prediction 196 216 - -
Viun3g03102 359 SMART FANCL_C_2 136 187 - -
Viun3g03102 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 186 IPR013083 -
Viun3g03102 359 PANTHER RING-H2 FINGER PROTEIN ATL16 41 309 IPR044600 GO:0016567|GO:0016740
Viun3g03102 359 MobiDBLite consensus disorder prediction 294 319 - -
Viun3g03102 359 CDD RING-H2_EL5-like 139 182 - -
Viun3g03102 359 Pfam Ring finger domain 139 182 IPR001841 -
Viun3g03102 359 SUPERFAMILY RING/U-box 139 188 - -
Viun3g03102 359 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Viun3g03102 359 SMART ring_2 140 181 IPR001841 -
Viun3g03102 359 MobiDBLite consensus disorder prediction 88 107 - -
Viun3g03102 359 FunFam E3 ubiquitin-protein ligase ATL6 103 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03102 Viun-Chr3 37302878 37304615 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03102 1 306 C3H Transcription Factor Family AT3G03550 43.284 6.33e-66 211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03102 3 37302878 37304615 Viun3g03102 3 37302878 37304615 ECH
Viun2g01422 2 24707367 24709180 Viun3g03102 3 37302878 37304615 PCT