Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03098 ATGTCTTCGCTGGAGTACGACCCGGCGCCGGTGGCGCCGCCGTACAACACCCCACCAGCGCTGATCGCCTTCACGCTGGGTGTGCTGGTGGTGTGCTTCGTGGCGTTCAGCATCGTTTACTTGTGCAAATACTGTTTCTCCAGCGTGGTCCAAACCTGGGCCTTTCAACGCACCGCTTCGGGTTCCATCATTCGTCTCACGCCCCATAGATCTCCTCCGAGAGGCCTTGACCCTTCGTTGCTGGAGGTCTTCCCCACCTTCCCCTACTCCTCCGTGAAGGAGCTCCGGAAGGATCAGAAGTACAGCTTGGAATGCGCCATCTGTTTGGTGGAGTTTGAGGATGACAGCTTGCTCCGCCTCTTGACCCTCTGCTGCCATGTCTTCCACCAGGACTGCATCGACCTCTGGCTCTGCTCTCACAAAACCTGCCCCGTTTGTCGCCGAGACCTCGACCAACCTCTCAAACCCGGCGACGTCGTCGTTTCCTCGCACAGCGGCGAGATACGCGTTGATGTCAGAGAAGAAGAAGTTCCTCAACATGTTTGTGATGGCAACCACGAACAACAACAACAACAACAACATCAACATCAACATGAACAACACGAACAACATGAACCTGAACGTGGTCGTGGACTGGAACATGACGAGGTGGTCGATGAACACGAGGAACAGATGTTTGTACGGTCGCATTCCACGGGGCACTCCATAGTTATGATTAGAGGGGAGGGGGTTGATGAGGGAAAGGACTATGATGACAAGTACACGTTGAGATTGCCGGAGCATGTTTTGAGAGTGAACGGCAAGCATAATTCTTCGAGGAGCTGTGCGAGTTTTAAGGATATGACCAAGCTTGATGCTCCTCCTGTACCTTGCAGTAATTGTGGGTTTGTTCAACCCCCATCACCCTGTTGCTCCTCCTCCCCAACTCATACTCAGAGATCTTGA 945 0.5354 MSSLEYDPAPVAPPYNTPPALIAFTLGVLVVCFVAFSIVYLCKYCFSSVVQTWAFQRTASGSIIRLTPHRSPPRGLDPSLLEVFPTFPYSSVKELRKDQKYSLECAICLVEFEDDSLLRLLTLCCHVFHQDCIDLWLCSHKTCPVCRRDLDQPLKPGDVVVSSHSGEIRVDVREEEVPQHVCDGNHEQQQQQQHQHQHEQHEQHEPERGRGLEHDEVVDEHEEQMFVRSHSTGHSIVMIRGEGVDEGKDYDDKYTLRLPEHVLRVNGKHNSSRSCASFKDMTKLDAPPVPCSNCGFVQPPSPCCSSSPTHTQRS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03098 314 Pfam Ring finger domain 104 147 IPR001841 -
Viun3g03098 314 MobiDBLite consensus disorder prediction 184 210 - -
Viun3g03098 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 153 IPR013083 -
Viun3g03098 314 SMART ring_2 105 146 IPR001841 -
Viun3g03098 314 FunFam E3 ubiquitin-protein ligase ATL6 65 153 - -
Viun3g03098 314 PANTHER RING FINGER DOMAIN-CONTAINING 18 150 - -
Viun3g03098 314 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Viun3g03098 314 SUPERFAMILY RING/U-box 97 153 - -
Viun3g03098 314 MobiDBLite consensus disorder prediction 192 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03098 Viun-Chr3 37263025 37266635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03098 2 286 C3H Transcription Factor Family AT2G35420 31.010 9.35e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03098 - - vum:124822565 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01423 2 24718129 24719257 Viun3g03098 3 37263025 37266635 PCT