Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun3g03096 | ATGGATTACGCTCGAGATGGGAACGTGGTTCAAATAATCACGGGCGGTGGCGGAGGAGGAGAGAGCTGGTCCGGCGATCAAGCTGATTGGGCAACGGAGGATGAGTACCGGTATTGGAACAACAACAACAACGGAGACGCGGAATCGACGCCGTCGAACTCGAATTACGAATCGCGGTCGGAGCCGCCTAGCAAAAAGTCCCGGAATTCGCAGGATGGGAGCTCAAACCGGTCAAAGGCTATAGGGAAAATGTTCTTCAAGACGAAACTGTGCTGCAAGTTCAGGGCAGGAACCTGCCCTTACATCACCAACTGCAATTTTGCCCACAGCATTGAGGAGCTCCGCCGCCCGCCACCAAATTGGCAGGAGATTGTGGCGGCACACGAGGAGGAGAAGGCAGTGATGGCAGAGCCAAGGGAGGAGTTTCAGATTCCCACTGTGGGGTCTTCCACATTTGCAGGGGATACGATGCAGAGGTCCTACAAGGGAAGGCATTGTAAGAAGTTTTACACTGAGGAAGGGTGTCCCTATGGGGATAGTTGCACCTTCCTTCATGATGAACAATCAAAGAACCGAGAGAGTGTTGCTATAAGTTTAGGCCCGGGGGGTTATGCTGGTGGTGGTGGCGGAAGCGGTGCCGGTGGTAGTGGTGCTGGCGGTGGAAGTGGAAATGGTGGTGGTGGTGGTAGTGGTGGTGCTAATGCTGCTGGGAATGGAGCTAATTCGAAGCCCTCTAATTGGAAAACCAGGATTTGCAATAAATGGGAGATGACAGGGTATTGCCCCTTTGGCAACAAATGCCATTTTGCTCACGGTGCCACAGAGTTGCACAGATATGGAGGGGGGCTTATGGAAGGAGAAAGCAGAGATGCTGCTTCTGTGGTTGGCAGTGACACGAACAAAGGAGCAGCAACAAAAGCTTCTGCTGACAACGTTGTTGCTGCTGTTACTCCTGTCGCCCATTCTGATGTGTACCATATTGGAGTCCCTTCACAAAGGCCTTCCATTGTGATTCAGAGGCCAGGGCAGAGAACTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATACGGTGATTGGATTGATGACATTGAATAG | 1104 | 0.5172 | MDYARDGNVVQIITGGGGGGESWSGDQADWATEDEYRYWNNNNNGDAESTPSNSNYESRSEPPSKKSRNSQDGSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVMAEPREEFQIPTVGSSTFAGDTMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYAGGGGGSGAGGSGAGGGSGNGGGGGSGGANAAGNGANSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDAASVVGSDTNKGAATKASADNVVAAVTPVAHSDVYHIGVPSQRPSIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE | 367 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun3g03096 | 367 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 225 | 278 | IPR045877 | GO:0003729 | |
Viun3g03096 | 367 | Pfam | CCCH-type zinc finger | 164 | 186 | IPR041367 | - | |
Viun3g03096 | 367 | SUPERFAMILY | CCCH zinc finger | 244 | 277 | IPR036855 | GO:0046872 | |
Viun3g03096 | 367 | Gene3D | - | 153 | 200 | - | - | |
Viun3g03096 | 367 | FunFam | Zinc finger CCCH domain-containing protein | 81 | 117 | - | - | |
Viun3g03096 | 367 | SMART | c3hfinal6 | 246 | 273 | IPR000571 | GO:0046872 | |
Viun3g03096 | 367 | SMART | c3hfinal6 | 160 | 187 | IPR000571 | GO:0046872 | |
Viun3g03096 | 367 | SMART | c3hfinal6 | 85 | 111 | IPR000571 | GO:0046872 | |
Viun3g03096 | 367 | FunFam | Zinc finger, CCCH-type | 154 | 192 | - | - | |
Viun3g03096 | 367 | ProSiteProfiles | Zinc finger C3H1-type profile. | 160 | 188 | IPR000571 | GO:0046872 | |
Viun3g03096 | 367 | MobiDBLite | consensus disorder prediction | 1 | 78 | - | - | |
Viun3g03096 | 367 | Gene3D | - | 80 | 116 | - | - | |
Viun3g03096 | 367 | Gene3D | - | 240 | 278 | - | - | |
Viun3g03096 | 367 | ProSiteProfiles | Zinc finger C3H1-type profile. | 246 | 274 | IPR000571 | GO:0046872 | |
Viun3g03096 | 367 | MobiDBLite | consensus disorder prediction | 36 | 60 | - | - | |
Viun3g03096 | 367 | SUPERFAMILY | CCCH zinc finger | 83 | 116 | IPR036855 | GO:0046872 | |
Viun3g03096 | 367 | SUPERFAMILY | CCCH zinc finger | 159 | 188 | IPR036855 | GO:0046872 | |
Viun3g03096 | 367 | ProSiteProfiles | Zinc finger C3H1-type profile. | 85 | 112 | IPR000571 | GO:0046872 | |
Viun3g03096 | 367 | FunFam | zinc finger CCCH domain-containing protein 15-like | 240 | 279 | - | - | |
Viun3g03096 | 367 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 247 | 272 | IPR000571 | GO:0046872 | |
Viun3g03096 | 367 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 86 | 110 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun3g03096 | Viun-Chr3 | 37257823 | 37261660 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun3g03096 | 248 | 276 | C3H Transcription Factor Family | AT1G68200 | 62.069 | 3.32e-07 | 49.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Viun3g03096 | zf-CCCH | 1.2e-10 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun3g03096 | - | - | gmx:102665148 | 613.609 |