Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03096 ATGGATTACGCTCGAGATGGGAACGTGGTTCAAATAATCACGGGCGGTGGCGGAGGAGGAGAGAGCTGGTCCGGCGATCAAGCTGATTGGGCAACGGAGGATGAGTACCGGTATTGGAACAACAACAACAACGGAGACGCGGAATCGACGCCGTCGAACTCGAATTACGAATCGCGGTCGGAGCCGCCTAGCAAAAAGTCCCGGAATTCGCAGGATGGGAGCTCAAACCGGTCAAAGGCTATAGGGAAAATGTTCTTCAAGACGAAACTGTGCTGCAAGTTCAGGGCAGGAACCTGCCCTTACATCACCAACTGCAATTTTGCCCACAGCATTGAGGAGCTCCGCCGCCCGCCACCAAATTGGCAGGAGATTGTGGCGGCACACGAGGAGGAGAAGGCAGTGATGGCAGAGCCAAGGGAGGAGTTTCAGATTCCCACTGTGGGGTCTTCCACATTTGCAGGGGATACGATGCAGAGGTCCTACAAGGGAAGGCATTGTAAGAAGTTTTACACTGAGGAAGGGTGTCCCTATGGGGATAGTTGCACCTTCCTTCATGATGAACAATCAAAGAACCGAGAGAGTGTTGCTATAAGTTTAGGCCCGGGGGGTTATGCTGGTGGTGGTGGCGGAAGCGGTGCCGGTGGTAGTGGTGCTGGCGGTGGAAGTGGAAATGGTGGTGGTGGTGGTAGTGGTGGTGCTAATGCTGCTGGGAATGGAGCTAATTCGAAGCCCTCTAATTGGAAAACCAGGATTTGCAATAAATGGGAGATGACAGGGTATTGCCCCTTTGGCAACAAATGCCATTTTGCTCACGGTGCCACAGAGTTGCACAGATATGGAGGGGGGCTTATGGAAGGAGAAAGCAGAGATGCTGCTTCTGTGGTTGGCAGTGACACGAACAAAGGAGCAGCAACAAAAGCTTCTGCTGACAACGTTGTTGCTGCTGTTACTCCTGTCGCCCATTCTGATGTGTACCATATTGGAGTCCCTTCACAAAGGCCTTCCATTGTGATTCAGAGGCCAGGGCAGAGAACTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATACGGTGATTGGATTGATGACATTGAATAG 1104 0.5172 MDYARDGNVVQIITGGGGGGESWSGDQADWATEDEYRYWNNNNNGDAESTPSNSNYESRSEPPSKKSRNSQDGSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVMAEPREEFQIPTVGSSTFAGDTMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYAGGGGGSGAGGSGAGGGSGNGGGGGSGGANAAGNGANSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDAASVVGSDTNKGAATKASADNVVAAVTPVAHSDVYHIGVPSQRPSIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03096 367 PANTHER CCCH ZINC FINGER/TIS11-RELATED 225 278 IPR045877 GO:0003729
Viun3g03096 367 Pfam CCCH-type zinc finger 164 186 IPR041367 -
Viun3g03096 367 SUPERFAMILY CCCH zinc finger 244 277 IPR036855 GO:0046872
Viun3g03096 367 Gene3D - 153 200 - -
Viun3g03096 367 FunFam Zinc finger CCCH domain-containing protein 81 117 - -
Viun3g03096 367 SMART c3hfinal6 246 273 IPR000571 GO:0046872
Viun3g03096 367 SMART c3hfinal6 160 187 IPR000571 GO:0046872
Viun3g03096 367 SMART c3hfinal6 85 111 IPR000571 GO:0046872
Viun3g03096 367 FunFam Zinc finger, CCCH-type 154 192 - -
Viun3g03096 367 ProSiteProfiles Zinc finger C3H1-type profile. 160 188 IPR000571 GO:0046872
Viun3g03096 367 MobiDBLite consensus disorder prediction 1 78 - -
Viun3g03096 367 Gene3D - 80 116 - -
Viun3g03096 367 Gene3D - 240 278 - -
Viun3g03096 367 ProSiteProfiles Zinc finger C3H1-type profile. 246 274 IPR000571 GO:0046872
Viun3g03096 367 MobiDBLite consensus disorder prediction 36 60 - -
Viun3g03096 367 SUPERFAMILY CCCH zinc finger 83 116 IPR036855 GO:0046872
Viun3g03096 367 SUPERFAMILY CCCH zinc finger 159 188 IPR036855 GO:0046872
Viun3g03096 367 ProSiteProfiles Zinc finger C3H1-type profile. 85 112 IPR000571 GO:0046872
Viun3g03096 367 FunFam zinc finger CCCH domain-containing protein 15-like 240 279 - -
Viun3g03096 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 247 272 IPR000571 GO:0046872
Viun3g03096 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03096 Viun-Chr3 37257823 37261660 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03096 248 276 C3H Transcription Factor Family AT1G68200 62.069 3.32e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun3g03096 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03096 - - gmx:102665148 613.609