Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03094 ATGGGTAGGTCACCTTGCAGTAACGAGAGTAACGTTAAGAAAGGGCCATGGACACCGGAAGAAGATGAAAAGCTAATGGATTATATTAGCAAACATGGAAGAGGAACGTGGAGAACACTTCCAAAGCATGCTGGTCTAAATAGGAACGGAAAAAGTTGCAGGTTGAGGTGGGAAAATTATCTAAGACCAGATATTAAGAGAGGAAAATTAACTGAAGAGGAGGAGCAATTGATCATCAACCTTCATTCAGTTCTCGGAAACAAGTGGTCAAAGATTGCTACAAGTCTCCCAGGGAGAACTGATAACGAGATCAAGAATTACTGGAACACCACCATAAGAAAAAAGCTTCTCCACATGGGTATTGATCCTGATACTCACAGGCCAAGAACTGACTTGAATCATCTGATGAATCTTTCTCAGTTGCTTGGCATGTCAATGAATCCTTGGACCAACCCTACTGGTTTACAAGCAGATGTCACTCAATTAGCCAAACTACAAGTGCTACAAAATATGTTACAACTTATGAACAACACTTCATTGATTAGCATGTCTAATCAAATTCTCAACCCTGCACTTGATACATTCCTCAATGGAACAAACACCTTCCAAGCGAGAGATCCAATGTTCAGAGGTTCAGAATATCCAAACCCTACTACTGGTAACAACATATCCGATCTATTCTCTCAAACACCCAGTGACTATTCTCAGCAGAACTTCTTCAAATCAGGGATAGAAAAAGAAAATGAAACTAATCATCAAGAAGTTCCTAGTGATACCCAAAACATTAACACTTCACAACAGAATCAAGCAGAAAATTTACTTCCACCGTTAGTTGTTGCTTCATGTCCTAGGACAACTACCTTCGACAAAATGGAGAGCAACTATAATGCAGCACAGAAATCCACAGAGTCACCTTTCTCTACAAATTTTGAGGCTTGGGAGAAGTTTCTCATTGAAGATGATGAAGCTAGTGGTTCCTACTGGAAAGAGATTCTAGACTTGACATCCACTTCTGCATCTCCAGTTTCCTGA 1032 0.4012 MGRSPCSNESNVKKGPWTPEEDEKLMDYISKHGRGTWRTLPKHAGLNRNGKSCRLRWENYLRPDIKRGKLTEEEEQLIINLHSVLGNKWSKIATSLPGRTDNEIKNYWNTTIRKKLLHMGIDPDTHRPRTDLNHLMNLSQLLGMSMNPWTNPTGLQADVTQLAKLQVLQNMLQLMNNTSLISMSNQILNPALDTFLNGTNTFQARDPMFRGSEYPNPTTGNNISDLFSQTPSDYSQQNFFKSGIEKENETNHQEVPSDTQNINTSQQNQAENLLPPLVVASCPRTTTFDKMESNYNAAQKSTESPFSTNFEAWEKFLIEDDEASGSYWKEILDLTSTSASPVS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03094 343 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun3g03094 343 SMART sant 13 63 IPR001005 -
Viun3g03094 343 SMART sant 66 114 IPR001005 -
Viun3g03094 343 FunFam MYB-related transcription factor 13 66 - -
Viun3g03094 343 CDD SANT 16 61 IPR001005 -
Viun3g03094 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun3g03094 343 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun3g03094 343 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun3g03094 343 FunFam Transcription factor MYB39 69 130 - -
Viun3g03094 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun3g03094 343 Gene3D - 13 66 - -
Viun3g03094 343 CDD SANT 71 112 IPR001005 -
Viun3g03094 343 PANTHER F14D16.11-RELATED 1 322 - -
Viun3g03094 343 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Viun3g03094 343 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun3g03094 343 Gene3D - 70 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03094 Viun-Chr3 37207451 37209100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03094 1 342 MYB Transcription Factor Family AT3G02940 44.034 6.36e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun3g03094 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03094 K09422 - gmx:100803906 485.723