Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03078 ATGAGCTTTCAGGACATCGAGGCTGGCCGGCCCTTCGGTTCCAGGCGTGGCTTGGCCAACGGCAAGCAGGACCCCACGCAGGCGGTGGCTGCCGGAATATTCCAGATCAACACCGCCGTCTCCACCTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAAGATACCCCCGAGCTCCGCGAGAAGCTCCACAAGACAAGACTACATATTGGGCAATTGGTGAAGGATACATCAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATGCAAGCAAGAAGATCGCAGATGCTAAACTTGCTAAAGACTTTCAAGCAGTATTGAAAGAGTTTCAGAAGGCACAACGTCTTTCAGCTGAAAGGGAAACGGCATACACTCCTTTTGTTCCCCAAGCAGTCCTTCCTTCCAGCTATACTGCTGGTGAATTAGGTGTTGGTTCTGATAAATCACCAGAAGAGCGTGCCTTACTCGTGGAATCAAGGAGGCAGGAGGTTTTGTTCTTAGATAATGAGATTGCCTTTAACGAGGCCATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAAGTTAACGAGATCTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAACCATGATTGATGATATTGGCTCCAACATTGAGAACTCCCATGCAGCAACAGCACAAGCAAAATCTCAACTTTTAAAAGCTTCGAAGACCCAAAGATCAAATTCCTCTTTGACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTGATCGTGATCATAGTTCTTGCTGCTTAG 822 0.4708 MSFQDIEAGRPFGSRRGLANGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTPFVPQAVLPSSYTAGELGVGSDKSPEERALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQAKSQLLKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03078 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Viun3g03078 273 FunFam Syntaxin-22 like 20 133 - -
Viun3g03078 273 CDD SNARE_Qa 200 241 - -
Viun3g03078 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Viun3g03078 273 SMART tSNARE_6 175 242 IPR000727 -
Viun3g03078 273 SMART SynN_4 14 127 IPR006011 GO:0016020
Viun3g03078 273 Pfam SNARE domain 216 268 IPR000727 -
Viun3g03078 273 CDD SynN 23 147 IPR006011 GO:0016020
Viun3g03078 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Viun3g03078 273 SUPERFAMILY t-snare proteins 23 235 IPR010989 GO:0016020|GO:0016192
Viun3g03078 273 Gene3D - 19 133 - -
Viun3g03078 273 MobiDBLite consensus disorder prediction 1 23 - -
Viun3g03078 273 Gene3D - 174 273 - -
Viun3g03078 273 PANTHER SYNTAXIN 26 265 IPR045242 -
Viun3g03078 273 FunFam Syntaxin-22 like 173 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03078 Viun-Chr3 37105915 37110009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03078 1 261 SNARE and Associated Proteins AT5G46860 78.161 9.96e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03078 - - gmx:547656 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01443 2 24870529 24873925 Viun3g03078 3 37105915 37110009 PCT