Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03077 ATGAGCTTTCAGGACATCGAGGCTGGCCGGCCCTTCGGTTCCAGGCGTGGCTTGGCCAACGGCAAGCAGGACCCCACGCAGGCGGTGGCTGCCGGAATATTCCAGATCAACACCGCCGTCTCCACCTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAAGATACCCCCGAGCTCCGCGAGAAGCTCCACAAGACAAGACTACATATTGGGCAATTGGTGAAGGATACATCAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATGCAAGCAAGAAGATCGCAGATGCTAAACTTGCTAAAGACTTTCAAGCAGTATTGAAAGAGTTTCAGAAGGCACAACGTCTTTCAGCTGAAAGGGAAACGGCATACACTCCTTTTGTTCCCCAAGCAGTCCTTCCTTCCAGCTATACTGCTGGTGAATTAGGTGTTGGTTCTGATAAATCACCAGAAGAGCGTGCCTTACTCGTGGAATCAAGGAGGCAGGAGGTTTTGTTCTTAGATAATGAGATTGCCTTTAACGAGGCCATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAAGTTAACGAGATCTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAACCATGATTGATGATATTGGCTCCAACATTGAGAACTCCCATGCAGCAACAGCACAAGCAAAATCTCAACTTTTAAAAGCTTCGAAGACCCAAAGATCAAATTCCTCTTTGGTTTGGTGGAAGGGAAGAAGTATGGAAGGGAAGAAGGGTTGGTGGAATAAGTAA 810 0.4741 MSFQDIEAGRPFGSRRGLANGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTPFVPQAVLPSSYTAGELGVGSDKSPEERALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQAKSQLLKASKTQRSNSSLVWWKGRSMEGKKGWWNK 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03077 269 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Viun3g03077 269 CDD SNARE_Qa 200 241 - -
Viun3g03077 269 SMART tSNARE_6 175 242 IPR000727 -
Viun3g03077 269 SMART SynN_4 14 127 IPR006011 GO:0016020
Viun3g03077 269 FunFam Syntaxin-22 like 20 133 - -
Viun3g03077 269 SUPERFAMILY t-snare proteins 23 235 IPR010989 GO:0016020|GO:0016192
Viun3g03077 269 Pfam SNARE domain 216 254 IPR000727 -
Viun3g03077 269 CDD SynN 23 147 IPR006011 GO:0016020
Viun3g03077 269 Gene3D - 174 257 - -
Viun3g03077 269 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Viun3g03077 269 PANTHER SYNTAXIN 26 251 IPR045242 -
Viun3g03077 269 FunFam Syntaxin-22 like 173 257 - -
Viun3g03077 269 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Viun3g03077 269 MobiDBLite consensus disorder prediction 1 23 - -
Viun3g03077 269 Gene3D - 19 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03077 Viun-Chr3 37105915 37110011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03077 1 255 SNARE and Associated Proteins AT5G46860 76.471 3.93e-141 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03077 - - gmx:547656 428.713