Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03075 ATGGAGGGAGCAGGCAGTGGGGGCGGAGATGTGTCGACGGCGGCGCCGACACCGATTCCGAACGCTAACGCGCCGCCGCCTTTCCTGAGCAAGACGTACGACATGGTGGACGACCCTTCGACGGACTCGATTGTGTCGTGGAGTCCAACAAACAACAGCTTCATTGTTTGGAACCCTCCGGAGTTCGCCAGAGACCTTTTGCCCAAACACTTCAAGCACAATAACTTCTCCAGCTTCGTTCGCCAGTTAAACACCTACGGATTTAGAAAGGTAGACCCGGATCGCTGGGAATTTGCAAATGAGGGATTTTTAAGGGGTCAAAAGCACTTGCTTAAGACTATATCTCGGCGGAAACCTGCCCATGGTCATAATAATCAACAAGCACAACAAGTACATGGACAGAGTTCATCGGTTGGGGCTTGTGTAGAAGTTGGTAAGTTTGGACTTGAGGAAGAGGTTGAGATTCTCAAGAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAGCAATCTACTGATAACCAGCTGCAGACTATGGTTCAGCGCCTTCAGGGAATGGAGCAACGACAGCAACAAATGATGTCATTCCTTGCAAAGGCTGTTCAGAGCCCTGGTTTCTTAGCTCAGTTTGTACAACAGCAAAATGATAGTAATAGACGCATAACAGAGGCGAACAAAAAACGTCGACTGAAGCAGGAAGGTATTGGTGAAATGGAACATACAGCTGCTTCTGATGGGCAAATTGTTAAATATCAACCTCTGATAAATGAAGCAGCAAAAGCAATGGTAAGGCAGATAATGAAATTGGATGCTTCTCGACTAGAATCTTTCAGTAATAACCCCGATAATTACTTGATTGGTGATCATTCATCACCATCCAGTGAAATGGACAGGGGAAACTCTTTGACTCGATCTTCTGGAGTAACACTTCAAGAGGTCCCTCCAACTAAGTTGCAGTCTTCTCATGTTCCATCTGCAACAAGGACTCAAGGGCAGGGCCATTCAACTGGAAAACCTGGGATTCTATCTTCTCCCCAAGTTGCAGCCTGTGGAGAAGTTACATATCCTAATATAAATGTTTCAGTTGGAGAACCTAATGCACCTGCTATCCCTGTTACTCACACAGATGAAATCATGCCGGACCTTTCTACAATACCAGATATAGTGGCAGGAAACATTCTCGATATTCCTCAAGAAAATTATATGGCACCAGAAACTGGTGGTGACGGATACATGGATCCTGCTTCATTTGGAGTGAATATGTCACTGCCCCTTGATTTTGATAGTATTTCACCTGAACCAGACATCGATGATTTGTTGAACTATCCTCACTTTTGGGATGATATTGTGCGAACTCCGGTATCAGAGGATTTTGAAACGAATGGTGCTGAAGTATTGAATGAGAATGAGGTGCAACCAACTGAAAATGGATGGGAAAAATCTCAAAATATGGACCTACTTACTGAACAGATGGGCTTACTTTCTTCTGATGCAAAAAAAAATTGA 1521 0.4464 MEGAGSGGGDVSTAAPTPIPNANAPPPFLSKTYDMVDDPSTDSIVSWSPTNNSFIVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTISRRKPAHGHNNQQAQQVHGQSSSVGACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNDSNRRITEANKKRRLKQEGIGEMEHTAASDGQIVKYQPLINEAAKAMVRQIMKLDASRLESFSNNPDNYLIGDHSSPSSEMDRGNSLTRSSGVTLQEVPPTKLQSSHVPSATRTQGQGHSTGKPGILSSPQVAACGEVTYPNINVSVGEPNAPAIPVTHTDEIMPDLSTIPDIVAGNILDIPQENYMAPETGGDGYMDPASFGVNMSLPLDFDSISPEPDIDDLLNYPHFWDDIVRTPVSEDFETNGAEVLNENEVQPTENGWEKSQNMDLLTEQMGLLSSDAKKN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03075 506 MobiDBLite consensus disorder prediction 225 243 - -
Viun3g03075 506 Pfam HSF-type DNA-binding 28 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g03075 506 FunFam Heat shock transcription factor 1 21 118 - -
Viun3g03075 506 SUPERFAMILY "Winged helix" DNA-binding domain 23 117 IPR036390 -
Viun3g03075 506 MobiDBLite consensus disorder prediction 223 246 - -
Viun3g03075 506 MobiDBLite consensus disorder prediction 1 26 - -
Viun3g03075 506 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 305 IPR027725 -
Viun3g03075 506 SMART hsfneu3 24 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g03075 506 Gene3D - 21 118 IPR036388 -
Viun3g03075 506 Coils Coil 146 173 - -
Viun3g03075 506 PRINTS Heat shock factor (HSF) domain signature 28 51 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g03075 506 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g03075 506 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g03075 506 MobiDBLite consensus disorder prediction 282 349 - -
Viun3g03075 506 ProSitePatterns HSF-type DNA-binding domain signature. 67 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g03075 506 MobiDBLite consensus disorder prediction 282 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03075 Viun-Chr3 37074880 37080238 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03075 7 500 HSF AT1G32330 52.849 4.70e-164 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun3g03075 HSF_DNA-bind 7.3e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03075 K09419 - gmx:732544 828.935