LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g03074	ATGGAGGGAGCAGGCAGTGGGGGCGGAGATGTGTCGACGGCGGCGCCGACACCGATTCCGAACGCTAACGCGCCGCCGCCTTTCCTGAGCAAGACGTACGACATGGTGGACGACCCTTCGACGGACTCGATTGTGTCGTGGAGTCCAACAAACAACAGCTTCATTGTTTGGAACCCTCCGGAGTTCGCCAGAGACCTTTTGCCCAAACACTTCAAGCACAATAACTTCTCCAGCTTCGTTCGCCAGTTAAACACCTACGACTTCATGGCATTCTTTGCTCTTGTTTGTAGCAACTCCTGTCCTGTTCTTCCCACCTTTGTTCTCAAGGGATTTAGAAAGGTAGACCCGGATCGCTGGGAATTTGCAAATGAGGGATTTTTAAGGGGTCAAAAGCACTTGCTTAAGACTATATCTCGGCGGAAACCTGCCCATGGTCATAATAATCAACAAGCACAACAAGTACATGGACAGAGTTCATCGGTTGGGGCTTGTGTAGAAGTTGGTAAGTTTGGACTTGAGGAAGAGGTTGAGATTCTCAAGAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAGCAATCTACTGATAACCAGCTGCAGACTATGGTTCAGCGCCTTCAGGGAATGGAGCAACGACAGCAACAAATGATGTCATTCCTTGCAAAGGCTGTTCAGAGCCCTGGTTTCTTAGCTCAGTTTGTACAACAGCAAAATGATAGTAATAGACGCATAACAGAGGCGAACAAAAAACGTCGACTGAAGCAGGAAGGTATTGGTGAAATGGAACATACAGCTGCTTCTGATGGGCAAATTGTTAAATATCAACCTCTGATAAATGAAGCAGCAAAAGCAATGGTAAGGCAGATAATGAAATTGGATGCTTCTCGACTAGAATCTTTCAGTAATAACCCCGATAATTACTTGATTGGTGATCATTCATCACCATCCAGTGAAATGGACAGGGGAAACTCTTTGACTCGATCTTCTGGAGTAACACTTCAAGAGGTCCCTCCAACTAAGTTGCAGTCTTCTCATGTTCCATCTGCAACAAGGACTCAAGGGCAGGGCCATTCAACTGGAAAACCTGGGATTCTATCTTCTCCCCAAGTTGCAGCCTGTGGAGAAGTTACATATCCTAATATAAATGTTTCAGTTGGAGAACCTAATGCACCTGCTATCCCTGTTACTCACACAGATGAAATCATGCCGGACCTTTCTACAATACCAGATATAGTGGCAGGAAACATTCTCGATATTCCTCAAGAAAATTATATGGCACCAGAAACTGGTGGTGACGGATACATGGATCCTGCTTCATTTGGAGTGAATATGTCACTGCCCCTTGATTTTGATAGTATTTCACCTGAACCAGACATCGATGATTTGTTGAACTATCCTCACTTTTGGGATGATATTGTGCGAACTCCGGTATCAGAGGATTTTGAAACGAATGGTGCTGAAGTATTGAATGAGAATGAGGTGCAACCAACTGAAAATGGATGGGAAAAATCTCAAAATATGGACCTACTTACTGAACAGATGGGCTTACTTTCTTCTGATGCAAAAAAAAATTGA	1590	0.4465	MEGAGSGGGDVSTAAPTPIPNANAPPPFLSKTYDMVDDPSTDSIVSWSPTNNSFIVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYDFMAFFALVCSNSCPVLPTFVLKGFRKVDPDRWEFANEGFLRGQKHLLKTISRRKPAHGHNNQQAQQVHGQSSSVGACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNDSNRRITEANKKRRLKQEGIGEMEHTAASDGQIVKYQPLINEAAKAMVRQIMKLDASRLESFSNNPDNYLIGDHSSPSSEMDRGNSLTRSSGVTLQEVPPTKLQSSHVPSATRTQGQGHSTGKPGILSSPQVAACGEVTYPNINVSVGEPNAPAIPVTHTDEIMPDLSTIPDIVAGNILDIPQENYMAPETGGDGYMDPASFGVNMSLPLDFDSISPEPDIDDLLNYPHFWDDIVRTPVSEDFETNGAEVLNENEVQPTENGWEKSQNMDLLTEQMGLLSSDAKKN	529

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Viun3g03074	529	MobiDBLite	consensus disorder prediction	305	372	-	-
Viun3g03074	529	Coils	Coil	169	196	-	-
Viun3g03074	529	MobiDBLite	consensus disorder prediction	1	22	-	-
Viun3g03074	529	FunFam	Heat shock transcription factor 1	21	141	-	-
Viun3g03074	529	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	22	328	IPR027725	-
Viun3g03074	529	MobiDBLite	consensus disorder prediction	248	266	-	-
Viun3g03074	529	PRINTS	Heat shock factor (HSF) domain signature	28	51	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Viun3g03074	529	PRINTS	Heat shock factor (HSF) domain signature	79	91	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Viun3g03074	529	PRINTS	Heat shock factor (HSF) domain signature	66	78	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Viun3g03074	529	Pfam	HSF-type DNA-binding	28	140	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Showing 1 to 10 of 15 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g03074	Viun-Chr3	37074880	37080242	Tandem

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g03074	7	523	HSF	AT1G32330	50.564	2.68e-158	458

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Viun3g03074		HSF_DNA-bind	3e-30	CL0123

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g03074	K09419		-	gmx:732544	815.839

Showing 1 to 1 of 1 entries

Previous1Next