Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03073 ATGGTGGACGACCCTTCGACGGACTCGATTGTGTCGTGGAGTCCAACAAACAACAGCTTCATTGTTTGGAACCCTCCGGAGTTCGCCAGAGACCTTTTGCCCAAACACTTCAAGCACAATAACTTCTCCAGCTTCGTTCGCCAGTTAAACACCTACGACTTCATGGCATTCTTTGCTCTTGTTTGTAGCAACTCCTGTCCTGTTCTTCCCACCTTTGTTCTCAAGGGATTTAGAAAGGTAGACCCGGATCGCTGGGAATTTGCAAATGAGGGATTTTTAAGGGGTCAAAAGCACTTGCTTAAGACTATATCTCGGCGGAAACCTGCCCATGGTCATAATAATCAACAAGCACAACAAGTACATGGACAGAGTTCATCGGTTGGGGCTTGTGTAGAAGTTGGTAAGTTTGGACTTGAGGAAGAGGTTGAGATTCTCAAGAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAGCAATCTACTGATAACCAGCTGCAGACTATGGTTCAGCGCCTTCAGGGAATGGAGCAACGACAGCAACAAATGATGTCATTCCTTGCAAAGGCTGTTCAGAGCCCTGGTTTCTTAGCTCAGTTTGTACAACAGCAAAATGATAGTAATAGACGCATAACAGAGGCGAACAAAAAACGTCGACTGAAGCAGGAAGGTATTGGTGAAATGGAACATACAGCTGCTTCTGATGGGCAAATTGTTAAATATCAACCTCTGATAAATGAAGCAGCAAAAGCAATGGTAAGGCAGATAATGAAATTGGATGCTTCTCGACTAGAATCTTTCAGTAATAACCCCGATAATTACTTGATTGGTGATCATTCATCACCATCCAGTGAAATGGACAGGGGAAACTCTTTGACTCGATCTTCTGGAGTAACACTTCAAGAGGTCCCTCCAACTAAGTTGCAGTCTTCTCATGTTCCATCTGCAACAAGGACTCAAGGGCAGGGCCATTCAACTGGAAAACCTGGGATTCTATCTTCTCCCCAAGTTGCAGCCTGTGGAGAAGTTACATATCCTAATATAAATGTTTCAGTTGGAGAACCTAATGCACCTGCTATCCCTGTTACTCACACAGATGAAATCATGCCGGACCTTTCTACAATACCAGATATAGTGGCAGGAAACATTCTCGATATTCCTCAAGAAAATTATATGGCACCAGAAACTGGTGGTGACGGATACATGGATCCTGCTTCATTTGGAGTGAATATGTCACTGCCCCTTGATTTTGATAGTATTTCACCTGAACCAGACATCGATGATTTGTTGAACTATCCTCACTTTTGGGATGATATTGTGCGAACTCCGGTATCAGAGGATTTTGAAACGAATGGTGCTGAAGTATTGAATGAGAATGAGGTGCAACCAACTGAAAATGGATGGGAAAAATCTCAAAATATGGACCTACTTACTGAACAGATGGGCTTACTTTCTTCTGATGCAAAAAAAAATTGA 1488 0.4315 MVDDPSTDSIVSWSPTNNSFIVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYDFMAFFALVCSNSCPVLPTFVLKGFRKVDPDRWEFANEGFLRGQKHLLKTISRRKPAHGHNNQQAQQVHGQSSSVGACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNDSNRRITEANKKRRLKQEGIGEMEHTAASDGQIVKYQPLINEAAKAMVRQIMKLDASRLESFSNNPDNYLIGDHSSPSSEMDRGNSLTRSSGVTLQEVPPTKLQSSHVPSATRTQGQGHSTGKPGILSSPQVAACGEVTYPNINVSVGEPNAPAIPVTHTDEIMPDLSTIPDIVAGNILDIPQENYMAPETGGDGYMDPASFGVNMSLPLDFDSISPEPDIDDLLNYPHFWDDIVRTPVSEDFETNGAEVLNENEVQPTENGWEKSQNMDLLTEQMGLLSSDAKKN 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03073 495 MobiDBLite consensus disorder prediction 271 336 - -
Viun3g03073 495 FunFam Heat stress transcription factor B-4 1 107 - -
Viun3g03073 495 PRINTS Heat shock factor (HSF) domain signature 45 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g03073 495 PRINTS Heat shock factor (HSF) domain signature 32 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g03073 495 SUPERFAMILY "Winged helix" DNA-binding domain 1 106 IPR036390 -
Viun3g03073 495 MobiDBLite consensus disorder prediction 212 235 - -
Viun3g03073 495 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 294 IPR027725 -
Viun3g03073 495 MobiDBLite consensus disorder prediction 214 232 - -
Viun3g03073 495 Gene3D - 1 107 IPR036388 -
Viun3g03073 495 SMART hsfneu3 1 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g03073 495 Pfam HSF-type DNA-binding 1 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g03073 495 Coils Coil 135 162 - -
Viun3g03073 495 MobiDBLite consensus disorder prediction 271 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03073 Viun-Chr3 37074880 37080254 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03073 1 489 HSF AT1G32330 50.201 4.25e-145 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun3g03073 HSF_DNA-bind 2.4e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03073 K09419 - gmx:732544 785.408