Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03071 ATGCTAAAGCTTCTGCTGCTAACGCCTTTAAAATTATTAAAATGCATATGCAAGATTATTTCACCTTTGAGTGCTTCTGTTCCTGCGGGGGTTGTTTTAATGAGGGAGCAAGCAGGGTTCAAGTTTACAACTAGAGTGCAGCCCCTTCGTCTTGCCGAATGGGATACCGAAGACAAAGTGGTGTTTTTCATGAGTGGGATAGATTATACATTTCGTGATTTTGAAAAGATGGCGAACAAGTCTTTTGCACAAAGATATTGCAGTGCTGGATGTCTTCCTGCCACATACTTGGAGAAAGAATTTTGGAGTGAAATTGGTTGTGGGAAGATGGAAACTGTTGAATATGCATGTGACGTTGATGGTAGTGCCTTTTCATCTTTGCCCACTGATCAACTTGGGAACAGCAAATGGAATTTGAAGAAATTTTCGTGGTTGCCCAAGTCTATTTTGCGGCTCTTGGAAACATCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGCATGTTTGCTTGGCACGTGGAAGATCATTATTTATACAGCGTTAATTATCATCACTGTGGAGCATCAAAAACTTGGTATGGCATTCCAGGTCACGCAGCATTGGAATTTGAAAGGGTGGTGAGACAACACGTGTATACTAATGATATTCTGTCAACTGGTGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGAAAAACAACTATGTTCCCACCAAATATTTTGTTGGAGCATGAAGTCCCTGTCTACAAGGCTGTTCAAAATCCAGGGGATTACGTAATAACTTTCCCCAGAGCATATCATGCTGGCTTTAGTCATGGCTTCAACTGCGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTGCAAGTCAAAGATATGCACTTCTTCACAAAGATCCCTTGCTTCCCCATGAAGAACTTTTATGCAAAGAAGCAATGCTTCTGTATGCAACATTAACACTTGAAGATTCAGACATTTCCCCTGAAGATTTGTTATCTCGTAATTGTGTTAAGATTTCTTTTGTTAATTTGATGCGCTTTCAACATTGTGCTCGTTGGCTGTTAATGAAATCAAGGGCATGTACAAGTGTTTCTTCACATTCCCAAGGTACAATTCTCTGTAGCCTCTGCAAACGGGACTGCTATGTAGCTTATGTTGACTGTGAATGTCACCTGCATCCAGTATGCCTTCGCCATGATGTAGAATCTCTTGACTTCACCTGTGGGACCAAGCGCACACTTTATCTTAGGGAAGATACTCCAGACATGGAAGCTGCGGCCAAGAGATTTGAGCAGGAAGATGGAATTTTGAGAGAGATACTTAAGGAAATGAAAAGTGAAAAAAACATCTATTCATGCCCTTTGTCAAACATGTTCCAGATGGCCGAGGCTAATGGATATACACCGTATTGTGAGATGAAATTTGATTCTACTGCTAATTTTTGTACCACCCCAAAGCTGTCAACAAACAACAATCAAGAGCATATGCGAAGTCAATTTGTTTCAAGACCTGAGGTATCTTCTGCTTCATCTACGCTATGTTCTCTTTCCAAACCTCCTGAGATCTCAGCTTCCAATATCGATGAGGTGCATGCTAACATGAAATTAGGCAGTCCTGATTTTGAAGAGAATTGTGAAAGAATATCCAATAATGCTTCTGAGTCTTTTCAATCCTCTGTTCAGTTTGAATGCCTTAATAAATCTATGGGTAATGTGCATAGATTAGAGAAGAAGCTCATTGTGGATAACAAGAGTGACGATTCTGATTCAGGGATTTTCAGGGTTAAGCGCCCTTCTTCTCTTAAGGCAGAGAGGAGAAATATAAGAGGTGCTAAGTTTTCATCAAATTCTGGACAGCAGGAACTCAAAGAATTGAAGAAAGACCTTGACGAAGGAAGGAGTGTGGCAGTGCCAGCAGTAGATATGAGCAAAAGAAAGGAAAGGAGTTACAAATATAGTGACAATGGTGAAATTTGGTCGAGGGAGAAATTTGCGAGGGGAAATAGCATTCCCGTATCCGTAAGATATAAGAAGAGAAGTAATGGGGAAGTTAGTAGACGACGACATCATTGCCAGACAGATAGGTTGCTGCATTCCATAGAGGTTGCTCCAAAGCGCCTTAAAACTCGAGACCCTTCATTTATGGGGTTAAACAGCAGATTGAATTGA 2199 0.4102 MLKLLLLTPLKLLKCICKIISPLSASVPAGVVLMREQAGFKFTTRVQPLRLAEWDTEDKVVFFMSGIDYTFRDFEKMANKSFAQRYCSAGCLPATYLEKEFWSEIGCGKMETVEYACDVDGSAFSSLPTDQLGNSKWNLKKFSWLPKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSVNYHHCGASKTWYGIPGHAALEFERVVRQHVYTNDILSTGGEDGAFDVLLGKTTMFPPNILLEHEVPVYKAVQNPGDYVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLHKDPLLPHEELLCKEAMLLYATLTLEDSDISPEDLLSRNCVKISFVNLMRFQHCARWLLMKSRACTSVSSHSQGTILCSLCKRDCYVAYVDCECHLHPVCLRHDVESLDFTCGTKRTLYLREDTPDMEAAAKRFEQEDGILREILKEMKSEKNIYSCPLSNMFQMAEANGYTPYCEMKFDSTANFCTTPKLSTNNNQEHMRSQFVSRPEVSSASSTLCSLSKPPEISASNIDEVHANMKLGSPDFEENCERISNNASESFQSSVQFECLNKSMGNVHRLEKKLIVDNKSDDSDSGIFRVKRPSSLKAERRNIRGAKFSSNSGQQELKELKKDLDEGRSVAVPAVDMSKRKERSYKYSDNGEIWSREKFARGNSIPVSVRYKKRSNGEVSRRRHHCQTDRLLHSIEVAPKRLKTRDPSFMGLNSRLN 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03071 732 Pfam C5HC2 zinc finger 384 435 IPR004198 -
Viun3g03071 732 SMART cupin_9 131 304 IPR003347 -
Viun3g03071 732 Pfam JmjC domain, hydroxylase 164 287 IPR003347 -
Viun3g03071 732 ProSiteProfiles JmjC domain profile. 134 304 IPR003347 -
Viun3g03071 732 PANTHER LYSINE-SPECIFIC DEMETHYLASE 16 685 - -
Viun3g03071 732 Coils Coil 724 732 - -
Viun3g03071 732 Gene3D Cupin 12 342 - -
Viun3g03071 732 FunFam Lysine-specific demethylase isoform A 5 331 - -
Viun3g03071 732 SUPERFAMILY Clavaminate synthase-like 65 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03071 Viun-Chr3 37053518 37064177 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03071 56 454 JUMONJI Transcription Factor Family AT2G34880 33.102 1.73e-55 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun3g03071 JmjC 2.1e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03071 - - vra:106765852 1310.05