Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03070 ATGAGGGAGCAAGCAGGGTTCAAGTTTACAACTAGAGTGCAGCCCCTTCGTCTTGCCGAATGGGATACCGAAGACAAAGTGGTGTTTTTCATGAGTGGGATAGATTATACATTTCGTGATTTTGAAAAGATGGCGAACAAGTCTTTTGCACAAAGATATTGCAGTGCTGGATGTCTTCCTGCCACATACTTGGAGAAAGAATTTTGGAGTGAAATTGGTTGTGGGAAGATGGAAACTGTTGAATATGCATGTGACGTTGATGGTAGTGCCTTTTCATCTTTGCCCACTGATCAACTTGGGAACAGCAAATGGAATTTGAAGAAATTTTCGTGGTTGCCCAAGTCTATTTTGCGGCTCTTGGAAACATCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGCATGTTTGCTTGGCACGTGGAAGATCATTATTTATACAGCGTTAATTATCATCACTGTGGAGCATCAAAAACTTGGTATGGCATTCCAGGTCACGCAGCATTGGAATTTGAAAGGGTGGTGAGACAACACGTGTATACTAATGATATTCTGTCAACTGGTGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGAAAAACAACTATGTTCCCACCAAATATTTTGTTGGAGCATGAAGTCCCTGTCTACAAGGCTGTTCAAAATCCAGGGGATTACGTAATAACTTTCCCCAGAGCATATCATGCTGGCTTTAGTCATGGCTTCAACTGCGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTGCAAGTCAAAGATATGCACTTCTTCACAAAGATCCCTTGCTTCCCCATGAAGAACTTTTATGCAAAGAAGCAATGCTTCTGTATGCAACATTAACACTTGAAGATTCAGACATTTCCCCTGAAGATTTGTTATCTCGTAATTGTGTTAAGATTTCTTTTGTTAATTTGATGCGCTTTCAACATTGTGCTCGTTGGCTGTTAATGAAATCAAGGGCATGTACAAGTGTTTCTTCACATTCCCAAGGTACAATTCTCTGTAGCCTCTGCAAACGGGACTGCTATGTAGCTTATGTTGACTGTGAATGTCACCTGCATCCAGTATGCCTTCGCCATGATGTAGAATCTCTTGACTTCACCTGTGGGACCAAGCGCACACTTTATCTTAGGGAAGATACTCCAGACATGGAAGCTGCGGCCAAGAGATTTGAGCAGGAAGATGGAATTTTGAGAGAGATACTTAAGGAAATGAAAAGTGAAAAAAACATCTATTCATGCCCTTTGTCAAACATGTTCCAGATGGCCGAGGCTAATGGATATACACCGTATTGTGAGATGAAATTTGATTCTACTGCTAATTTTTGTACCACCCCAAAGCTGTCAACAAACAACAATCAAGAGCATATGCGAAGTCAATTTGTTTCAAGACCTGAGGTATCTTCTGCTTCATCTACGCTATGTTCTCTTTCCAAACCTCCTGAGATCTCAGCTTCCAATATCGATGAGGTGCATGCTAACATGAAATTAGGCAGTCCTGATTTTGAAGAGAATTGTGAAAGAATATCCAATAATGCTTCTGAGTCTTTTCAATCCTCTGTTCAGTTTGAATGCCTTAATAAATCTATGGGTAATGTGCATAGATTAGAGAAGAAGCTCATTGTGGATAACAAGAGTGACGATTCTGATTCAGGGATTTTCAGGGTTAAGCGCCCTTCTTCTCTTAAGGCAGAGAGGAGAAATATAAGAGGTGCTAAGTTTTCATCAAATTCTGGACAGCAGGAACTCAAAGAATTGAAGAAAGACCTTGACGAAGGAAGGAGTGTGGCAGTGCCAGCAGTAGATATGAGCAAAAGAAAGGAAAGGAGTTACAAATATAGTGACAATGGTGAAATTTGGTCGAGGGAGAAATTTGCGAGGGGAAATAGCATTCCCGTATCCGTAAGATATAAGAAGAGAAGTAATGGGGAAGTTAGTAGACGACGACATCATTGCCAGACAGATAGGTTGCTGCATTCCATAGAGGTTGCTCCAAAGCGCCTTAAAACTCGAGACCCTTCATTTATGGGGTTAAACAGCAGATTGAATTGA 2100 0.4119 MREQAGFKFTTRVQPLRLAEWDTEDKVVFFMSGIDYTFRDFEKMANKSFAQRYCSAGCLPATYLEKEFWSEIGCGKMETVEYACDVDGSAFSSLPTDQLGNSKWNLKKFSWLPKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSVNYHHCGASKTWYGIPGHAALEFERVVRQHVYTNDILSTGGEDGAFDVLLGKTTMFPPNILLEHEVPVYKAVQNPGDYVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLHKDPLLPHEELLCKEAMLLYATLTLEDSDISPEDLLSRNCVKISFVNLMRFQHCARWLLMKSRACTSVSSHSQGTILCSLCKRDCYVAYVDCECHLHPVCLRHDVESLDFTCGTKRTLYLREDTPDMEAAAKRFEQEDGILREILKEMKSEKNIYSCPLSNMFQMAEANGYTPYCEMKFDSTANFCTTPKLSTNNNQEHMRSQFVSRPEVSSASSTLCSLSKPPEISASNIDEVHANMKLGSPDFEENCERISNNASESFQSSVQFECLNKSMGNVHRLEKKLIVDNKSDDSDSGIFRVKRPSSLKAERRNIRGAKFSSNSGQQELKELKKDLDEGRSVAVPAVDMSKRKERSYKYSDNGEIWSREKFARGNSIPVSVRYKKRSNGEVSRRRHHCQTDRLLHSIEVAPKRLKTRDPSFMGLNSRLN 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03070 699 SUPERFAMILY Clavaminate synthase-like 32 287 - -
Viun3g03070 699 Pfam C5HC2 zinc finger 351 402 IPR004198 -
Viun3g03070 699 ProSiteProfiles JmjC domain profile. 101 271 IPR003347 -
Viun3g03070 699 Gene3D Cupin 1 309 - -
Viun3g03070 699 PANTHER LYSINE-SPECIFIC DEMETHYLASE 7 652 - -
Viun3g03070 699 Pfam JmjC domain, hydroxylase 131 254 IPR003347 -
Viun3g03070 699 SMART cupin_9 98 271 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03070 Viun-Chr3 37053518 37064177 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03070 23 421 JUMONJI Transcription Factor Family AT2G34880 33.102 1.98e-55 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun3g03070 JmjC 1.9e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03070 - - vra:106765852 1276.92