Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03068 ATGGAAGCTAGAAATGGGTTAGAATATTTGAAATATAAAAGGCTTCAGCGAGCAAAATCTACTACTGCCAATGCCACAGCAACAAACATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTCTTAGTACTTCTGGATCATATAGTATGAGGTTGCCCGGTGATGCAGGTAGCTTTTCCCGGCGGAAGGTGGATAAGTATGACACAAGTGATCTGGCTTGGACTGAGAAAATTCCAGAGTGTCCTGTGTATTATCCAACAAAGGAGGAATTTGATGATCCCTTGCTTTATTTGCAAAGAATTGCTCCCGAAGCTTCTAAATATGGCATATGCAAGATTATTTCACCTTTGAGTGCTTCTGTTCCTGCGGGGGTTGTTTTAATGAGGGAGCAAGCAGGGTTCAAGTTTACAACTAGAGTGCAGCCCCTTCGTCTTGCCGAATGGGATACCGAAGACAAAGTGGTGTTTTTCATGAGTGGGATAGATTATACATTTCGTGATTTTGAAAAGATGGCGAACAAGTCTTTTGCACAAAGATATTGCAGTGCTGGATGTCTTCCTGCCACATACTTGGAGAAAGAATTTTGGAGTGAAATTGGTTGTGGGAAGATGGAAACTGTTGAATATGCATGTGACGTTGATGGTAGTGCCTTTTCATCTTTGCCCACTGATCAACTTGGGAACAGCAAATGGAATTTGAAGAAATTTTCGTGGTTGCCCAAGTCTATTTTGCGGCTCTTGGAAACATCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGCATGTTTGCTTGGCACGTGGAAGATCATTATTTATACAGCGTTAATTATCATCACTGTGGAGCATCAAAAACTTGGTATGGCATTCCAGGTCACGCAGCATTGGAATTTGAAAGGGTGGTGAGACAACACGTGTATACTAATGATATTCTGTCAACTGGTGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGAAAAACAACTATGTTCCCACCAAATATTTTGTTGGAGCATGAAGTCCCTGTCTACAAGGCTGTTCAAAATCCAGGGGATTACGTAATAACTTTCCCCAGAGCATATCATGCTGGCTTTAGTCATGGCTTCAACTGCGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTGCAAGTCAAAGATATGCACTTCTTCACAAAGATCCCTTGCTTCCCCATGAAGAACTTTTATGCAAAGAAGCAATGCTTCTGTATGCAACATTAACACTTGAAGATTCAGACATTTCCCCTGAAGATTTGTTATCTCGTAATTGTGTTAAGATTTCTTTTGTTAATTTGATGCGCTTTCAACATTGTGCTCGTTGGCTGTTAATGAAATCAAGGGCATGTACAAGTGTTTCTTCACATTCCCAAGGTACAATTCTCTGTAGCCTCTGCAAACGGGACTGCTATGTAGCTTATGTTGACTGTGAATGTCACCTGCATCCAGTATGCCTTCGCCATGATGTAGAATCTCTTGACTTCACCTGTGGGACCAAGCGCACACTTTATCTTAGGGAAGATACTCCAGACATGGAAGCTGCGGCCAAGAGATTTGAGCAGGAAGATGGAATTTTGAGAGAGATACTTAAGGAAATGAAAAGTGAAAAAAACATCTATTCATGCCCTTTGTCAAACATGTTCCAGATGGCCGAGGCTAATGGATATACACCGTATTGTGAGATGAAATTTGATTCTACTGCTAATTTTTGTACCACCCCAAAGCTGTCAACAAACAACAATCAAGAGCATATGCGAAGTCAATTTGTTTCAAGACCTGAGGTATCTTCTGCTTCATCTACGCTATGTTCTCTTTCCAAACCTCCTGAGATCTCAGCTTCCAATATCGATGAGGTGCATGCTAACATGAAATTAGGCAGTCCTGATTTTGAAGAGAATTGTGAAAGAATATCCAATAATGCTTCTGAGTCTTTTCAATCCTCTGTTCAGTTTGAATGCCTTAATAAATCTATGGGTAATGTGCATAGATTAGAGAAGAAGCTCATTGTGGATAACAAGAGTGACGATTCTGATTCAGGGATTTTCAGGGTTAAGCGCCCTTCTTCTCTTAAGGCAGAGAGGAGAAATATAAGAGGTGCTAAGTTTTCATCAAATTCTGGACAGCAGGAACTCAAAGAATTGAAGAAAGACCTTGACGAAGGAAGGAGTGTGGCAGTGCCAGCAGTAGATATGAGCAAAAGAAAGGAAAGGAGTTACAAATATAGTGACAATGGTGAAATTTGGTCGAGGGAGAAATTTGCGAGGGGAAATAGCATTCCCGTATCCGTAAGATATAAGAAGAGAAGTAATGGGGAAGTTAGTAGACGACGACATCATTGCCAGACAGATAGGTTGCTGCATTCCATAGAGGTTGCTCCAAAGCGCCTTAAAACTCGAGACCCTTCATTTATGGGGTTAAACAGCAGATTGAATTGA 2481 0.4127 MEARNGLEYLKYKRLQRAKSTTANATATNIANMMNRSGGDALSTSGSYSMRLPGDAGSFSRRKVDKYDTSDLAWTEKIPECPVYYPTKEEFDDPLLYLQRIAPEASKYGICKIISPLSASVPAGVVLMREQAGFKFTTRVQPLRLAEWDTEDKVVFFMSGIDYTFRDFEKMANKSFAQRYCSAGCLPATYLEKEFWSEIGCGKMETVEYACDVDGSAFSSLPTDQLGNSKWNLKKFSWLPKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSVNYHHCGASKTWYGIPGHAALEFERVVRQHVYTNDILSTGGEDGAFDVLLGKTTMFPPNILLEHEVPVYKAVQNPGDYVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLHKDPLLPHEELLCKEAMLLYATLTLEDSDISPEDLLSRNCVKISFVNLMRFQHCARWLLMKSRACTSVSSHSQGTILCSLCKRDCYVAYVDCECHLHPVCLRHDVESLDFTCGTKRTLYLREDTPDMEAAAKRFEQEDGILREILKEMKSEKNIYSCPLSNMFQMAEANGYTPYCEMKFDSTANFCTTPKLSTNNNQEHMRSQFVSRPEVSSASSTLCSLSKPPEISASNIDEVHANMKLGSPDFEENCERISNNASESFQSSVQFECLNKSMGNVHRLEKKLIVDNKSDDSDSGIFRVKRPSSLKAERRNIRGAKFSSNSGQQELKELKKDLDEGRSVAVPAVDMSKRKERSYKYSDNGEIWSREKFARGNSIPVSVRYKKRSNGEVSRRRHHCQTDRLLHSIEVAPKRLKTRDPSFMGLNSRLN 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03068 826 PANTHER LYSINE-SPECIFIC DEMETHYLASE 73 779 - -
Viun3g03068 826 SMART JmjN_1 80 121 IPR003349 -
Viun3g03068 826 SMART cupin_9 225 398 IPR003347 -
Viun3g03068 826 Gene3D Cupin 74 403 - -
Viun3g03068 826 ProSiteProfiles JmjN domain profile. 81 122 IPR003349 -
Viun3g03068 826 Pfam JmjC domain, hydroxylase 258 381 IPR003347 -
Viun3g03068 826 Pfam C5HC2 zinc finger 478 529 IPR004198 -
Viun3g03068 826 Pfam jmjN domain 82 114 IPR003349 -
Viun3g03068 826 SUPERFAMILY Clavaminate synthase-like 159 414 - -
Viun3g03068 826 ProSiteProfiles JmjC domain profile. 228 398 IPR003347 -
Viun3g03068 826 FunFam Lysine-specific demethylase isoform A 76 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03068 Viun-Chr3 37053518 37064822 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03068 78 548 JUMONJI Transcription Factor Family AT2G34880 31.434 2.14e-65 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun3g03068 JmjC 2.5e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03068 - - vra:106765852 1506.5