Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03067 ATGAAACTCGTGCGAGGAAGAGTACGTTCATCTATGGAAGCTAGAAATGGGTTAGAATATTTGAAATATAAAAGGCTTCAGCGAGCAAAATCTACTACTGCCAATGCCACAGCAACAAACATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTCTTAGTACTTCTGGATCATATAGTATGAGGTTGCCCGGTGATGCAGGTAGCTTTTCCCGGCGGAAGGTGGATAAGTATGACACAAGTGATCTGGCTTGGACTGAGAAAATTCCAGAGTGTCCTGTGTATTATCCAACAAAGGAGGAATTTGATGATCCCTTGCTTTATTTGCAAAGAATTGCTCCCGAAGCTTCTAAATATGGCATATGCAAGATTATTTCACCTTTGAGTGCTTCTGTTCCTGCGGGGGTTGTTTTAATGAGGGAGCAAGCAGGGTTCAAGTTTACAACTAGAGTGCAGCCCCTTCGTCTTGCCGAATGGGATACCGAAGACAAAGTGGTGTTTTTCATGAGTGGGATAGATTATACATTTCGTGATTTTGAAAAGATGGCGAACAAGTCTTTTGCACAAAGATATTGCAGTGCTGGATGTCTTCCTGCCACATACTTGGAGAAAGAATTTTGGAGTGAAATTGGTTGTGGGAAGATGGAAACTGTTGAATATGCATGTGACGTTGATGGTAGTGCCTTTTCATCTTTGCCCACTGATCAACTTGGGAACAGCAAATGGAATTTGAAGAAATTTTCGTGGTTGCCCAAGTCTATTTTGCGGCTCTTGGAAACATCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGCATGTTTGCTTGGCACGTGGAAGATCATTATTTATACAGCGTTAATTATCATCACTGTGGAGCATCAAAAACTTGGTATGGCATTCCAGGTCACGCAGCATTGGAATTTGAAAGGGTGGTGAGACAACACGTGTATACTAATGATATTCTGTCAACTGGTGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGAAAAACAACTATGTTCCCACCAAATATTTTGTTGGAGCATGAAGTCCCTGTCTACAAGGCTGTTCAAAATCCAGGGGATTACGTAATAACTTTCCCCAGAGCATATCATGCTGGCTTTAGTCATGGCTTCAACTGCGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTGCAAGTCAAAGATATGCACTTCTTCACAAAGATCCCTTGCTTCCCCATGAAGAACTTTTATGCAAAGAAGCAATGCTTCTGTATGCAACATTAACACTTGAAGATTCAGACATTTCCCCTGAAGATTTGTTATCTCGTAATTGTGTTAAGATTTCTTTTGTTAATTTGATGCGCTTTCAACATTGTGCTCGTTGGCTGTTAATGAAATCAAGGGCATGTACAAGTGTTTCTTCACATTCCCAAGGTACAATTCTCTGTAGCCTCTGCAAACGGGACTGCTATGTAGCTTATGTTGACTGTGAATGTCACCTGCATCCAGTATGCCTTCGCCATGATGTAGAATCTCTTGACTTCACCTGTGGGACCAAGCGCACACTTTATCTTAGGGAAGATACTCCAGACATGGAAGCTGCGGCCAAGAGATTTGAGCAGGAAGATGGAATTTTGAGAGAGATACTTAAGGAAATGAAAAGTGAAAAAAACATCTATTCATGCCCTTTGTCAAACATGTTCCAGATGGCCGAGGCTAATGGATATACACCGTATTGTGAGATGAAATTTGATTCTACTGCTAATTTTTGTACCACCCCAAAGCTGTCAACAAACAACAATCAAGAGCATATGCGAAGTCAATTTGTTTCAAGACCTGAGGTATCTTCTGCTTCATCTACGCTATGTTCTCTTTCCAAACCTCCTGAGATCTCAGCTTCCAATATCGATGAGGTGCATGCTAACATGAAATTAGGCAGTCCTGATTTTGAAGAGAATTGTGAAAGAATATCCAATAATGCTTCTGAGTCTTTTCAATCCTCTGTTCAGTTTGAATGCCTTAATAAATCTATGGGTAATGTGCATAGATTAGAGAAGAAGCTCATTGTGGATAACAAGAGTGACGATTCTGATTCAGGGATTTTCAGGGTTAAGCGCCCTTCTTCTCTTAAGGCAGAGAGGAGAAATATAAGAGGTGCTAAGTTTTCATCAAATTCTGGACAGCAGGAACTCAAAGAATTGAAGAAAGACCTTGACGAAGGAAGGAGTGTGGCAGTGCCAGCAGTAGATATGAGCAAAAGAAAGGAAAGGAGTTACAAATATAGTGACAATGGTGAAATTTGGTCGAGGGAGAAATTTGCGAGGGGAAATAGCATTCCCGTATCCGTAAGATATAAGAAGAGAAGTAATGGGGAAGTTAGTAGACGACGACATCATTGCCAGACAGATAGGTTGCTGCATTCCATAGAGGTTGCTCCAAAGCGCCTTAAAACTCGAGACCCTTCATTTATGGGGTTAAACAGCAGATTGAATTGA 2514 0.4133 MKLVRGRVRSSMEARNGLEYLKYKRLQRAKSTTANATATNIANMMNRSGGDALSTSGSYSMRLPGDAGSFSRRKVDKYDTSDLAWTEKIPECPVYYPTKEEFDDPLLYLQRIAPEASKYGICKIISPLSASVPAGVVLMREQAGFKFTTRVQPLRLAEWDTEDKVVFFMSGIDYTFRDFEKMANKSFAQRYCSAGCLPATYLEKEFWSEIGCGKMETVEYACDVDGSAFSSLPTDQLGNSKWNLKKFSWLPKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSVNYHHCGASKTWYGIPGHAALEFERVVRQHVYTNDILSTGGEDGAFDVLLGKTTMFPPNILLEHEVPVYKAVQNPGDYVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLHKDPLLPHEELLCKEAMLLYATLTLEDSDISPEDLLSRNCVKISFVNLMRFQHCARWLLMKSRACTSVSSHSQGTILCSLCKRDCYVAYVDCECHLHPVCLRHDVESLDFTCGTKRTLYLREDTPDMEAAAKRFEQEDGILREILKEMKSEKNIYSCPLSNMFQMAEANGYTPYCEMKFDSTANFCTTPKLSTNNNQEHMRSQFVSRPEVSSASSTLCSLSKPPEISASNIDEVHANMKLGSPDFEENCERISNNASESFQSSVQFECLNKSMGNVHRLEKKLIVDNKSDDSDSGIFRVKRPSSLKAERRNIRGAKFSSNSGQQELKELKKDLDEGRSVAVPAVDMSKRKERSYKYSDNGEIWSREKFARGNSIPVSVRYKKRSNGEVSRRRHHCQTDRLLHSIEVAPKRLKTRDPSFMGLNSRLN 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03067 837 FunFam Lysine-specific demethylase isoform A 87 436 - -
Viun3g03067 837 Pfam jmjN domain 93 125 IPR003349 -
Viun3g03067 837 Pfam C5HC2 zinc finger 489 540 IPR004198 -
Viun3g03067 837 Pfam JmjC domain, hydroxylase 269 392 IPR003347 -
Viun3g03067 837 SUPERFAMILY Clavaminate synthase-like 170 425 - -
Viun3g03067 837 PANTHER LYSINE-SPECIFIC DEMETHYLASE 84 790 - -
Viun3g03067 837 SMART JmjN_1 91 132 IPR003349 -
Viun3g03067 837 SMART cupin_9 236 409 IPR003347 -
Viun3g03067 837 Gene3D Cupin 85 414 - -
Viun3g03067 837 ProSiteProfiles JmjC domain profile. 239 409 IPR003347 -
Viun3g03067 837 ProSiteProfiles JmjN domain profile. 92 133 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03067 Viun-Chr3 37053518 37064823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03067 89 559 JUMONJI Transcription Factor Family AT2G34880 31.434 1.90e-65 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun3g03067 JmjC 2.6e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03067 - - vra:106765852 1506.5