Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03066 ATGGTGCGAGGAAGAGTACGTTCATCTATGGAAGCTAGAAATGGGTTAGAATATTTGAAATATAAAAGGCTTCAGCGAGCAAAATCTACTACTGCCAATGCCACAGCAACAAACATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTCTTAGTACTTCTGGATCATATAGTATGAGGTTGCCCGGTGATGCAGGTAGCTTTTCCCGGCGGAAGGTGGATAAGTATGACACAAGTGATCTGGCTTGGACTGAGAAAATTCCAGAGTGTCCTGTGTATTATCCAACAAAGGAGGAATTTGATGATCCCTTGCTTTATTTGCAAAGAATTGCTCCCGAAGCTTCTAAATATGGCATATGCAAGATTATTTCACCTTTGAGTGCTTCTGTTCCTGCGGGGGTTGTTTTAATGAGGGAGCAAGCAGGGTTCAAGTTTACAACTAGAGTGCAGCCCCTTCGTCTTGCCGAATGGGATACCGAAGACAAAGTGGTGTTTTTCATGAGTGGGATAGATTATACATTTCGTGATTTTGAAAAGATGGCGAACAAGTCTTTTGCACAAAGATATTGCAGTGCTGGATGTCTTCCTGCCACATACTTGGAGAAAGAATTTTGGAGTGAAATTGGTTGTGGGAAGATGGAAACTGTTGAATATGCATGTGACGTTGATGGTAGTGCCTTTTCATCTTTGCCCACTGATCAACTTGGGAACAGCAAATGGAATTTGAAGAAATTTTCGTGGTTGCCCAAGTCTATTTTGCGGCTCTTGGAAACATCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGCATGTTTGCTTGGCACGTGGAAGATCATTATTTATACAGCGTTAATTATCATCACTGTGGAGCATCAAAAACTTGGTATGGCATTCCAGGTCACGCAGCATTGGAATTTGAAAGGGTGGTGAGACAACACGTGTATACTAATGATATTCTGTCAACTGGTGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGAAAAACAACTATGTTCCCACCAAATATTTTGTTGGAGCATGAAGTCCCTGTCTACAAGGCTGTTCAAAATCCAGGGGATTACGTAATAACTTTCCCCAGAGCATATCATGCTGGCTTTAGTCATGGCTTCAACTGCGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTGCAAGTCAAAGATATGCACTTCTTCACAAAGATCCCTTGCTTCCCCATGAAGAACTTTTATGCAAAGAAGCAATGCTTCTGTATGCAACATTAACACTTGAAGATTCAGACATTTCCCCTGAAGATTTGTTATCTCGTAATTGTGTTAAGATTTCTTTTGTTAATTTGATGCGCTTTCAACATTGTGCTCGTTGGCTGTTAATGAAATCAAGGGCATGTACAAGTGTTTCTTCACATTCCCAAGGTACAATTCTCTGTAGCCTCTGCAAACGGGACTGCTATGTAGCTTATGTTGACTGTGAATGTCACCTGCATCCAGTATGCCTTCGCCATGATGTAGAATCTCTTGACTTCACCTGTGGGACCAAGCGCACACTTTATCTTAGGGAAGATACTCCAGACATGGAAGCTGCGGCCAAGAGATTTGAGCAGGAAGATGGAATTTTGAGAGAGATACTTAAGGAAATGAAAAGTGAAAAAAACATCTATTCATGCCCTTTGTCAAACATGTTCCAGATGGCCGAGGCTAATGGATATACACCGTATTGTGAGATGAAATTTGATTCTACTGCTAATTTTTGTACCACCCCAAAGCTGTCAACAAACAACAATCAAGAGCATATGCGAAGTCAATTTGTTTCAAGACCTGAGGTATCTTCTGCTTCATCTACGCTATGTTCTCTTTCCAAACCTCCTGAGATCTCAGCTTCCAATATCGATGAGGTGCATGCTAACATGAAATTAGGCAGTCCTGATTTTGAAGAGAATTGTGAAAGAATATCCAATAATGCTTCTGAGTCTTTTCAATCCTCTGTTCAGTTTGAATGCCTTAATAAATCTATGGGTAATGTGCATAGATTAGAGAAGAAGCTCATTGTGGATAACAAGAGTGACGATTCTGATTCAGGGATTTTCAGGGTTAAGCGCCCTTCTTCTCTTAAGGCAGAGAGGAGAAATATAAGAGGTGCTAAGTTTTCATCAAATTCTGGACAGCAGGAACTCAAAGAATTGAAGAAAGACCTTGACGAAGGAAGGAGTGTGGCAGTGCCAGCAGTAGATATGAGCAAAAGAAAGGAAAGGAGTTACAAATATAGTGACAATGGTGAAATTTGGTCGAGGGAGAAATTTGCGAGGGGAAATAGCATTCCCGTATCCGTAAGATATAAGAAGAGAAGTAATGGGGAAGTTAGTAGACGACGACATCATTGCCAGACAGATAGGTTGCTGCATTCCATAGAGGTTGCTCCAAAGCGCCTTAAAACTCGAGACCCTTCATTTATGGGGTTAAACAGCAGATTGAATTGA 2508 0.4135 MVRGRVRSSMEARNGLEYLKYKRLQRAKSTTANATATNIANMMNRSGGDALSTSGSYSMRLPGDAGSFSRRKVDKYDTSDLAWTEKIPECPVYYPTKEEFDDPLLYLQRIAPEASKYGICKIISPLSASVPAGVVLMREQAGFKFTTRVQPLRLAEWDTEDKVVFFMSGIDYTFRDFEKMANKSFAQRYCSAGCLPATYLEKEFWSEIGCGKMETVEYACDVDGSAFSSLPTDQLGNSKWNLKKFSWLPKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSVNYHHCGASKTWYGIPGHAALEFERVVRQHVYTNDILSTGGEDGAFDVLLGKTTMFPPNILLEHEVPVYKAVQNPGDYVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLHKDPLLPHEELLCKEAMLLYATLTLEDSDISPEDLLSRNCVKISFVNLMRFQHCARWLLMKSRACTSVSSHSQGTILCSLCKRDCYVAYVDCECHLHPVCLRHDVESLDFTCGTKRTLYLREDTPDMEAAAKRFEQEDGILREILKEMKSEKNIYSCPLSNMFQMAEANGYTPYCEMKFDSTANFCTTPKLSTNNNQEHMRSQFVSRPEVSSASSTLCSLSKPPEISASNIDEVHANMKLGSPDFEENCERISNNASESFQSSVQFECLNKSMGNVHRLEKKLIVDNKSDDSDSGIFRVKRPSSLKAERRNIRGAKFSSNSGQQELKELKKDLDEGRSVAVPAVDMSKRKERSYKYSDNGEIWSREKFARGNSIPVSVRYKKRSNGEVSRRRHHCQTDRLLHSIEVAPKRLKTRDPSFMGLNSRLN 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03066 835 SUPERFAMILY Clavaminate synthase-like 168 423 - -
Viun3g03066 835 Pfam jmjN domain 91 123 IPR003349 -
Viun3g03066 835 ProSiteProfiles JmjC domain profile. 237 407 IPR003347 -
Viun3g03066 835 Pfam JmjC domain, hydroxylase 267 390 IPR003347 -
Viun3g03066 835 FunFam Lysine-specific demethylase isoform A 85 434 - -
Viun3g03066 835 SMART JmjN_1 89 130 IPR003349 -
Viun3g03066 835 SMART cupin_9 234 407 IPR003347 -
Viun3g03066 835 PANTHER LYSINE-SPECIFIC DEMETHYLASE 82 788 - -
Viun3g03066 835 Gene3D Cupin 83 412 - -
Viun3g03066 835 ProSiteProfiles JmjN domain profile. 90 131 IPR003349 -
Viun3g03066 835 Pfam C5HC2 zinc finger 487 538 IPR004198 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03066 Viun-Chr3 37053518 37066144 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03066 87 557 JUMONJI Transcription Factor Family AT2G34880 31.434 2.73e-65 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun3g03066 JmjC 2.5e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03066 - - vra:106765852 1506.5