Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03061 ATGGAGGATGAATCTAATCCCACACTCCATGTTGATACTACTGTATTTCCATTACCCCAAAAAGGCAGGAGGGACGATGGAGATGAGCAAGAGAATCAAGGAAGTCCAAAAAGGCAGAAGAGAGATGCGGTTGCTAAGGAGCTCAAGAATGGGTTTCAGGAGAATATCAATATCTATGAGGGTGATAACTCTGTAGAAAGATATGAAGAAACACAAGAGAAAATGATGGAAGTTTTGATGGACACAACATCAGATGCTCAAGAATGTGACTCAGAAAATGTTCAACATGATTCTTCTAGTTATAGTTCAGATGACAACAGCCATGATGACAATAACTCTGATTTTATTGACGAGCCACATATGACTACAAATATGGACACCACATCAGATGCTCAAGAATGTGACTCAGAAAATGTTCAAAATGATTCTTCTAGAGATAGTTCAGATGACAACAACCATGATGACAATAACTCTGATTTTATTGATGAGCCACATATGGCTACAAATCCTGTGAAAAGTTCAGAGAACAGTGAGGAAGAAATTGAGGAAAATGCCTCTAAAACTCCACAAGTAAATCCTGAAATGCTAACTACTTTGAAAGAACGAAGTGTTGGATCAAAGACAATATATACTAAAAACTTATCATATAGTGTGGAACGTGCTGATCTGGAAGAACTTTTCAAAGATTGTGGAGAAATTGTTGATATTCGTCTACATCTGGATGAGGAAGGGAGGTTTAGAGGCTTTGGTCATGTTGAGTTTGCGACAGAAGAAGCAGTGCTAAAAGCACTTAAGTTAAATAATACAGAATTGTTGAGATGTCGCATGAGAATTGGTGTAGCTCGAGAAAGGCGAAAATATACTCCCAACAGAAGCAACAGATATCAAGGTACTGAAGGGAGATGTTCAAAGATTTCAGAAGATTGTGAGCAAGAAACTGAGGAAAAAGACTCCAACGCTGTTCAGACAATTCCAAAAGTTCAAGCTACTTGGAAAGAACAAAAAGCTACATCGAAGACAATATGTGCTAGAAATTTGTCTTATAGTGTGGAAAGGGAAGATATGGAAATTCTTTTCAAAGAGTGTGGAGAAATTGTTGATATTCGTCTACAAAGAGATCGTGAAGGGAGGTCTAGAGGCTTTGGGCATGTTCAGTTTGCAACTACAGAAGCTGCACAAAAGGCTCTTGAGTTGGATAATACAAAATGGTTTGGACGATGCATTGGTGTTGGTATAGCTCAGGAAAAGAATGAATATGCCCCCAATAGGAGTTTTAGCAACTGGAGCAATTCATTCAATAAGTCCGAAAGAATCGAGCCCATCAAAAGGATATGGAGTTCAGAGTCCCGTGAGGAAGATATTGAGGGGAAAGCCTTAAAAGATCCTTGGAAAAATTCTAGATTGTTGGCTACTATGAAAGAAGAAAATGCTTCATCAATATATGTCAGAAACTTGTCATACAAAGCGGAACAGGCTGATGTAGAAAATTTTTTCAAAGAGTGTGGAGAAATCGTTGATGTTCGGCTACATAGAGATAATGAGGGGAGGTTAAAAGGCTATGGACATGTTACGTTTGCAACCGCAGAAGCTGCACTAAAAGCTCTTGAGTTGGATAAAACAGAGTTGTTGAGACGTTGCATTGGAGTTCAAATAGCTCGAGGAAAGGGTGAACGTACCTGGAATAGAAGCAACTCATTCCAAAAGCATGAAAGATTTCAGCCCATGAAGGATACAGAGCATTCAGAGGACTGTAAGGAAGAAATTGAGAAAAAAGCCCGCGAAAGTCCTCATGAAAGTCCTAAAACGCTAGCTACTCTAAAAGAACAAAATGCTGCACCAAAGACGATATTTGTTGGAAACTTGTCACATGAAGTGGAACAGGCTGATGTGGAAAATCTTTTCAAAGAATGTGGAGGAATTGCTTATCTTCATCCACATACAGATCATGAAGGGAGGCCTAAAGGCTTTGTACATATTGAGTTTTCAACGGCTGAAGCAGCACAAAAGGCTCTTGAGTTGAATCACACAGAATTGTTTGGACGTACCATCACAGTTGAATTAGCTCGAGAAAAAAGTCATAGCTACAGTAGAAGCAACTGGAGCAACTCATTCCAGAAGGGTGAAAGAATTCAATCTCTAACTGTATATGTCAAGGGATTTGATACTTCCCTCGAGGAAGAAGAGATCAAAGCTAGCCTGGAAGAGCATTTTGGTTCCTGTGGAGAGATGACGAGGATAACAGTTCCGAAATTTTATGATTCTGGTGCATTTAAGGGGTTTGCTATCCTAGAATTCAAGGATGTTGACAGTGCGAAGAGAGCTCTAAATCTTGATCAAACTGAGATCGGAGGTCATACCTTGTTAGTTGAGAAAGCAAGGCCTCGACGTGATGGAAATGGCTCTAAAAATGGTGTTGGTTGGGGAGAAAGCAGTGGTGGTGGATGGCATTCTGGTGGTGGCTGGCATTCTTTATTTTTCTCATGA 2484 0.3977 MEDESNPTLHVDTTVFPLPQKGRRDDGDEQENQGSPKRQKRDAVAKELKNGFQENINIYEGDNSVERYEETQEKMMEVLMDTTSDAQECDSENVQHDSSSYSSDDNSHDDNNSDFIDEPHMTTNMDTTSDAQECDSENVQNDSSRDSSDDNNHDDNNSDFIDEPHMATNPVKSSENSEEEIEENASKTPQVNPEMLTTLKERSVGSKTIYTKNLSYSVERADLEELFKDCGEIVDIRLHLDEEGRFRGFGHVEFATEEAVLKALKLNNTELLRCRMRIGVARERRKYTPNRSNRYQGTEGRCSKISEDCEQETEEKDSNAVQTIPKVQATWKEQKATSKTICARNLSYSVEREDMEILFKECGEIVDIRLQRDREGRSRGFGHVQFATTEAAQKALELDNTKWFGRCIGVGIAQEKNEYAPNRSFSNWSNSFNKSERIEPIKRIWSSESREEDIEGKALKDPWKNSRLLATMKEENASSIYVRNLSYKAEQADVENFFKECGEIVDVRLHRDNEGRLKGYGHVTFATAEAALKALELDKTELLRRCIGVQIARGKGERTWNRSNSFQKHERFQPMKDTEHSEDCKEEIEKKARESPHESPKTLATLKEQNAAPKTIFVGNLSHEVEQADVENLFKECGGIAYLHPHTDHEGRPKGFVHIEFSTAEAAQKALELNHTELFGRTITVELAREKSHSYSRSNWSNSFQKGERIQSLTVYVKGFDTSLEEEEIKASLEEHFGSCGEMTRITVPKFYDSGAFKGFAILEFKDVDSAKRALNLDQTEIGGHTLLVEKARPRRDGNGSKNGVGWGESSGGGWHSGGGWHSLFFS 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03061 827 MobiDBLite consensus disorder prediction 139 161 - -
Viun3g03061 827 MobiDBLite consensus disorder prediction 19 44 - -
Viun3g03061 827 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 480 547 IPR000504 GO:0003723
Viun3g03061 827 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 344 408 IPR000504 GO:0003723
Viun3g03061 827 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 276 IPR000504 GO:0003723
Viun3g03061 827 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 616 684 IPR000504 GO:0003723
Viun3g03061 827 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 715 787 IPR000504 GO:0003723
Viun3g03061 827 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 713 794 IPR000504 GO:0003723
Viun3g03061 827 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 283 IPR000504 GO:0003723
Viun3g03061 827 MobiDBLite consensus disorder prediction 60 189 - -
Viun3g03061 827 Gene3D - 698 823 IPR012677 -
Viun3g03061 827 MobiDBLite consensus disorder prediction 1 44 - -
Viun3g03061 827 Coils Coil 525 545 - -
Viun3g03061 827 SUPERFAMILY RNA-binding domain, RBD 700 821 IPR035979 GO:0003676
Viun3g03061 827 MobiDBLite consensus disorder prediction 117 138 - -
Viun3g03061 827 MobiDBLite consensus disorder prediction 102 116 - -
Viun3g03061 827 SUPERFAMILY RNA-binding domain, RBD 329 427 IPR035979 GO:0003676
Viun3g03061 827 SUPERFAMILY RNA-binding domain, RBD 473 567 IPR035979 GO:0003676
Viun3g03061 827 MobiDBLite consensus disorder prediction 84 101 - -
Viun3g03061 827 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 88 305 - -
Viun3g03061 827 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 614 690 IPR000504 GO:0003723
Viun3g03061 827 SUPERFAMILY RNA-binding domain, RBD 608 708 IPR035979 GO:0003676
Viun3g03061 827 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 415 IPR000504 GO:0003723
Viun3g03061 827 Gene3D - 429 562 IPR012677 -
Viun3g03061 827 Gene3D - 120 293 IPR012677 -
Viun3g03061 827 Gene3D - 563 697 IPR012677 -
Viun3g03061 827 Gene3D - 294 424 IPR012677 -
Viun3g03061 827 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 478 554 IPR000504 GO:0003723
Viun3g03061 827 SMART rrm1_1 714 790 IPR000504 GO:0003723
Viun3g03061 827 SMART rrm1_1 340 411 IPR000504 GO:0003723
Viun3g03061 827 SMART rrm1_1 208 279 IPR000504 GO:0003723
Viun3g03061 827 SMART rrm1_1 615 686 IPR000504 GO:0003723
Viun3g03061 827 SMART rrm1_1 479 550 IPR000504 GO:0003723
Viun3g03061 827 SUPERFAMILY RNA-binding domain, RBD 200 300 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03061 Viun-Chr3 36960711 36976779 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03061 315 691 Eukaryotic Initiation Factors Gene Family AT2G36660 22.656 3.96e-19 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03061 - - pvu:PHAVU_003G282900g 1173.69