Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03060 ATGGAGGATGAATCTAATCCCACACTCCATGTTGATACTACTGTATTTCCATTACCCCAAAAAGGCAGGAGGGACGATGGAGATGAGCAAGAGAATCAAGGAAGTCCAAAAAGGCAGAAGAGAGATGCGGTTGCTAAGGAGCTCAAGAATGGGTTTCAGGAGAATATCAATATCTATGAGGGTGATAACTCTGTAGAAAGATATGAAGAAACACAAGAGAAAATGATGGAAGTTTTGATGGACACAACATCAGATGCTCAAGAATGTGACTCAGAAAATGTTCAACATGATTCTTCTAGTTATAGTTCAGATGACAACAGCCATGATGACAATAACTCTGATTTTATTGACGAGCCACATATGACTACAAATATGGACACCACATCAGATGCTCAAGAATGTGACTCAGAAAATGTTCAAAATGATTCTTCTAGAGATAGTTCAGATGACAACAACCATGATGACAATAACTCTGATTTTATTGATGAGCCACATATGGCTACAAATCCTGTGAAAAGTTCAGAGAACAGTGAGGAAGAAATTGAGGAAAATGCCTCTAAAACTCCACAAGTAAATCCTGAAATGCTAACTACTTTGAAAGAACGAAGTGTTGGATCAAAGACAATATATACTAAAAACTTATCATATAGTGTGGAACGTGCTGATCTGGAAGAACTTTTCAAAGATTGTGGAGAAATTGTTGATATTCGTCTACATCTGGATGAGGAAGGGAGGTTTAGAGGCTTTGGTCATGTTGAGTTTGCGACAGAAGAAGCAGTGCTAAAAGCACTTAAGTTAAATAATACAGAATTGTTGAGATGTCGCATGAGAATTGGTGTAGCTCGAGAAAGGCGAAAATATACTCCCAACAGAAGATATCAAGGTACTGAAGGGAGATGTTCAAAGATTTCAGAAGATTGTGAGCAAGAAACTGAGGAAAAAGACTCCAACGCTGTTCAGACAATTCCAAAAGTTCAAGCTACTTGGAAAGAACAAAAAGCTACATCGAAGACAATATGTGCTAGAAATTTGTCTTATAGTGTGGAAAGGGAAGATATGGAAATTCTTTTCAAAGAGTGTGGAGAAATTGTTGATATTCGTCTACAAAGAGATCGTGAAGGGAGGTCTAGAGGCTTTGGGCATGTTCAGTTTGCAACTACAGAAGCTGCACAAAAGGCTCTTGAGTTGGATAATACAAAATGGTTTGGACGATGCATTGGTGTTGGTATAGCTCAGGAAAAGAATGAATATGCCCCCAATAGGAGTTTTAGCAACTGGAGCAATTCATTCAATAAGTCCGAAAGAATCGAGCCCATCAAAAGGATATGGAGTTCAGAGTCCCGTGAGGAAGATATTGAGGGGAAAGCCTTAAAAGATCCTTGGAAAAATTCTAGATTGTTGGCTACTATGAAAGAAGAAAATGCTTCATCAATATATGTCAGAAACTTGTCATACAAAGCGGAACAGGCTGATGTAGAAAATTTTTTCAAAGAGTGTGGAGAAATCGTTGATGTTCGGCTACATAGAGATAATGAGGGGAGGTTAAAAGGCTATGGACATGTTACGTTTGCAACCGCAGAAGCTGCACTAAAAGCTCTTGAGTTGGATAAAACAGAGTTGTTGAGACGTTGCATTGGAGTTCAAATAGCTCGAGGAAAGGGTGAACGTACCTGGAATAGAAGCAACTCATTCCAAAAGCATGAAAGATTTCAGCCCATGAAGGATACAGAGCATTCAGAGGACTGTAAGGAAGAAATTGAGAAAAAAGCCCGCGAAAGTCCTCATGAAAGTCCTAAAACGCTAGCTACTCTAAAAGAACAAAATGCTGCACCAAAGACGATATTTGTTGGAAACTTGTCACATGAAGTGGAACAGGCTGATGTGGAAAATCTTTTCAAAGAATGTGGAGGAATTGCTTATCTTCATCCACATACAGATCATGAAGGGAGGCCTAAAGGCTTTGTACATATTGAGTTTTCAACGGCTGAAGCAGCACAAAAGGCTCTTGAGTTGAATCACACAGAATTGTTTGGACGTACCATCACAGTTGAATTAGCTCGAGAAAAAAGTCATAGCTACAGTAGAAGCAACTGGAGCAACTCATTCCAGAAGGGTGAAAGAATTCAATCTCTAACTGTATATGTCAAGGGATTTGATACTTCCCTCGAGGAAGAAGAGATCAAAGCTAGCCTGGAAGAGCATTTTGGTTCCTGTGGAGAGATGACGAGGATAACAGTTCCGAAATTTTATGATTCTGGTGCATTTAAGGGGTTTGCTATCCTAGAATTCAAGGATGTTGACAGTGCGAAGAGAGCTCTAAATCTTGATCAAACTGAGATCGGAGGTCATACCTTGTTAGTTGAGAAAGCAAGGCCTCGACGTGATGGAAATGGCTCTAAAAATGGTGTTGGTTGGGGAGAAAGCAGTGGTGGTGGATGGCATTCTGGTGGTGGCTGGCATTCTTTATTTTTCTCATGA 2478 0.3975 MEDESNPTLHVDTTVFPLPQKGRRDDGDEQENQGSPKRQKRDAVAKELKNGFQENINIYEGDNSVERYEETQEKMMEVLMDTTSDAQECDSENVQHDSSSYSSDDNSHDDNNSDFIDEPHMTTNMDTTSDAQECDSENVQNDSSRDSSDDNNHDDNNSDFIDEPHMATNPVKSSENSEEEIEENASKTPQVNPEMLTTLKERSVGSKTIYTKNLSYSVERADLEELFKDCGEIVDIRLHLDEEGRFRGFGHVEFATEEAVLKALKLNNTELLRCRMRIGVARERRKYTPNRRYQGTEGRCSKISEDCEQETEEKDSNAVQTIPKVQATWKEQKATSKTICARNLSYSVEREDMEILFKECGEIVDIRLQRDREGRSRGFGHVQFATTEAAQKALELDNTKWFGRCIGVGIAQEKNEYAPNRSFSNWSNSFNKSERIEPIKRIWSSESREEDIEGKALKDPWKNSRLLATMKEENASSIYVRNLSYKAEQADVENFFKECGEIVDVRLHRDNEGRLKGYGHVTFATAEAALKALELDKTELLRRCIGVQIARGKGERTWNRSNSFQKHERFQPMKDTEHSEDCKEEIEKKARESPHESPKTLATLKEQNAAPKTIFVGNLSHEVEQADVENLFKECGGIAYLHPHTDHEGRPKGFVHIEFSTAEAAQKALELNHTELFGRTITVELAREKSHSYSRSNWSNSFQKGERIQSLTVYVKGFDTSLEEEEIKASLEEHFGSCGEMTRITVPKFYDSGAFKGFAILEFKDVDSAKRALNLDQTEIGGHTLLVEKARPRRDGNGSKNGVGWGESSGGGWHSGGGWHSLFFS 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03060 825 SMART rrm1_1 477 548 IPR000504 GO:0003723
Viun3g03060 825 SMART rrm1_1 613 684 IPR000504 GO:0003723
Viun3g03060 825 SMART rrm1_1 208 279 IPR000504 GO:0003723
Viun3g03060 825 SMART rrm1_1 712 788 IPR000504 GO:0003723
Viun3g03060 825 SMART rrm1_1 338 409 IPR000504 GO:0003723
Viun3g03060 825 MobiDBLite consensus disorder prediction 139 161 - -
Viun3g03060 825 MobiDBLite consensus disorder prediction 19 44 - -
Viun3g03060 825 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 612 688 IPR000504 GO:0003723
Viun3g03060 825 Coils Coil 523 543 - -
Viun3g03060 825 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 283 IPR000504 GO:0003723
Viun3g03060 825 SUPERFAMILY RNA-binding domain, RBD 200 300 IPR035979 GO:0003676
Viun3g03060 825 MobiDBLite consensus disorder prediction 60 189 - -
Viun3g03060 825 Gene3D - 292 422 IPR012677 -
Viun3g03060 825 Gene3D - 121 291 IPR012677 -
Viun3g03060 825 Gene3D - 561 695 IPR012677 -
Viun3g03060 825 Gene3D - 427 560 IPR012677 -
Viun3g03060 825 MobiDBLite consensus disorder prediction 1 44 - -
Viun3g03060 825 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 88 291 - -
Viun3g03060 825 MobiDBLite consensus disorder prediction 102 116 - -
Viun3g03060 825 MobiDBLite consensus disorder prediction 117 138 - -
Viun3g03060 825 SUPERFAMILY RNA-binding domain, RBD 327 425 IPR035979 GO:0003676
Viun3g03060 825 SUPERFAMILY RNA-binding domain, RBD 698 819 IPR035979 GO:0003676
Viun3g03060 825 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 476 552 IPR000504 GO:0003723
Viun3g03060 825 Gene3D - 696 821 IPR012677 -
Viun3g03060 825 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 413 IPR000504 GO:0003723
Viun3g03060 825 MobiDBLite consensus disorder prediction 84 101 - -
Viun3g03060 825 SUPERFAMILY RNA-binding domain, RBD 471 565 IPR035979 GO:0003676
Viun3g03060 825 SUPERFAMILY RNA-binding domain, RBD 606 706 IPR035979 GO:0003676
Viun3g03060 825 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 614 682 IPR000504 GO:0003723
Viun3g03060 825 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 713 785 IPR000504 GO:0003723
Viun3g03060 825 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 276 IPR000504 GO:0003723
Viun3g03060 825 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 342 406 IPR000504 GO:0003723
Viun3g03060 825 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 478 545 IPR000504 GO:0003723
Viun3g03060 825 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 711 792 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03060 Viun-Chr3 36960711 36976779 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03060 206 689 Eukaryotic Initiation Factors Gene Family AT2G36660 21.971 2.96e-19 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03060 - - pvu:PHAVU_003G282900g 1169.07