Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03058 ATGGAGGATGAATCTAATCCCACACTCCATGTTGATACTACTGTATTTCCATTACCCCAAAAAGGCAGGAGGGACGATGGAGATGAGCAAGAGAATCAAGGAAGTCCAAAAAGGCAGAAGAGAGATGCGGTTGCTAAGGAGCTCAAGAATGGGATGGACACAACATCAGATGCTCAAGAATGTGACTCAGAAAATGTTCAACATGATTCTTCTAGTTATAGTTCAGATGACAACAGCCATGATGACAATAACTCTGATTTTATTGACGAGCCACATATGACTACAAATATGGACACCACATCAGATGCTCAAGAATGTGACTCAGAAAATGTTCAAAATGATTCTTCTAGAGATAGTTCAGATGACAACAACCATGATGACAATAACTCTGATTTTATTGATGAGCCACATATGGCTACAAATCCTGTGAAAAGTTCAGAGAACAGTGAGGAAGAAATTGAGGAAAATGCCTCTAAAACTCCACAAGTAAATCCTGAAATGCTAACTACTTTGAAAGAACGAAGTGTTGGATCAAAGACAATATATACTAAAAACTTATCATATAGTGTGGAACGTGCTGATCTGGAAGAACTTTTCAAAGATTGTGGAGAAATTGTTGATATTCGTCTACATCTGGATGAGGAAGGGAGGTTTAGAGGCTTTGGTCATGTTGAGTTTGCGACAGAAGAAGCAGTGCTAAAAGCACTTAAGTTAAATAATACAGAATTGTTGAGATGTCGCATGAGAATTGGTGTAGCTCGAGAAAGGCGAAAATATACTCCCAACAGAAGCAACAGATATCAAGGTACTGAAGGGAGATGTTCAAAGATTTCAGAAGATTGTGAGCAAGAAACTGAGGAAAAAGACTCCAACGCTGTTCAGACAATTCCAAAAGTTCAAGCTACTTGGAAAGAACAAAAAGCTACATCGAAGACAATATGTGCTAGAAATTTGTCTTATAGTGTGGAAAGGGAAGATATGGAAATTCTTTTCAAAGAGTGTGGAGAAATTGTTGATATTCGTCTACAAAGAGATCGTGAAGGGAGGTCTAGAGGCTTTGGGCATGTTCAGTTTGCAACTACAGAAGCTGCACAAAAGGCTCTTGAGTTGGATAATACAAAATGGTTTGGACGATGCATTGGTGTTGGTATAGCTCAGGAAAAGAATGAATATGCCCCCAATAGGAGTTTTAGCAACTGGAGCAATTCATTCAATAAGTCCGAAAGAATCGAGCCCATCAAAAGGATATGGAGTTCAGAGTCCCGTGAGGAAGATATTGAGGGGAAAGCCTTAAAAGATCCTTGGAAAAATTCTAGATTGTTGGCTACTATGAAAGAAGAAAATGCTTCATCAATATATGTCAGAAACTTGTCATACAAAGCGGAACAGGCTGATGTAGAAAATTTTTTCAAAGAGTGTGGAGAAATCGTTGATGTTCGGCTACATAGAGATAATGAGGGGAGGTTAAAAGGCTATGGACATGTTACGTTTGCAACCGCAGAAGCTGCACTAAAAGCTCTTGAGTTGGATAAAACAGAGTTGTTGAGACGTTGCATTGGAGTTCAAATAGCTCGAGGAAAGGGTGAACGTACCTGGAATAGAAGCAACTCATTCCAAAAGCATGAAAGATTTCAGCCCATGAAGGATACAGAGCATTCAGAGGACTGTAAGGAAGAAATTGAGAAAAAAGCCCGCGAAAGTCCTCATGAAAGTCCTAAAACGCTAGCTACTCTAAAAGAACAAAATGCTGCACCAAAGACGATATTTGTTGGAAACTTGTCACATGAAGTGGAACAGGCTGATGTGGAAAATCTTTTCAAAGAATGTGGAGGAATTGCTTATCTTCATCCACATACAGATCATGAAGGGAGGCCTAAAGGCTTTGTACATATTGAGTTTTCAACGGCTGAAGCAGCACAAAAGGCTCTTGAGTTGAATCACACAGAATTGTTTGGACGTACCATCACAGTTGAATTAGCTCGAGAAAAAAGTCATAGCTACAGTAGAAGCAACTGGAGCAACTCATTCCAGAAGGGTGAAAGAATTCAATCTCTAACTGTATATGTCAAGGGATTTGATACTTCCCTCGAGGAAGAAGAGATCAAAGCTAGCCTGGAAGAGCATTTTGGTTCCTGTGGAGAGATGACGAGGATAACAGTTCCGAAATTTTATGATTCTGGTGCATTTAAGGGGTTTGCTATCCTAGAATTCAAGGATGTTGACAGTGCGAAGAGAGCTCTAAATCTTGATCAAACTGAGATCGGAGGTCATACCTTGTTAGTTGAGAAAGCAAGGCCTCGACGTGATGGAAATGGCTCTAAAAATGGTGTTGGTTGGGGAGAAAGCAGTGGTGGTGGATGGCATTCTGGTGGTGGCTGGCATTCTTTATTTTTCTCATGA 2400 0.4004 MEDESNPTLHVDTTVFPLPQKGRRDDGDEQENQGSPKRQKRDAVAKELKNGMDTTSDAQECDSENVQHDSSSYSSDDNSHDDNNSDFIDEPHMTTNMDTTSDAQECDSENVQNDSSRDSSDDNNHDDNNSDFIDEPHMATNPVKSSENSEEEIEENASKTPQVNPEMLTTLKERSVGSKTIYTKNLSYSVERADLEELFKDCGEIVDIRLHLDEEGRFRGFGHVEFATEEAVLKALKLNNTELLRCRMRIGVARERRKYTPNRSNRYQGTEGRCSKISEDCEQETEEKDSNAVQTIPKVQATWKEQKATSKTICARNLSYSVEREDMEILFKECGEIVDIRLQRDREGRSRGFGHVQFATTEAAQKALELDNTKWFGRCIGVGIAQEKNEYAPNRSFSNWSNSFNKSERIEPIKRIWSSESREEDIEGKALKDPWKNSRLLATMKEENASSIYVRNLSYKAEQADVENFFKECGEIVDVRLHRDNEGRLKGYGHVTFATAEAALKALELDKTELLRRCIGVQIARGKGERTWNRSNSFQKHERFQPMKDTEHSEDCKEEIEKKARESPHESPKTLATLKEQNAAPKTIFVGNLSHEVEQADVENLFKECGGIAYLHPHTDHEGRPKGFVHIEFSTAEAAQKALELNHTELFGRTITVELAREKSHSYSRSNWSNSFQKGERIQSLTVYVKGFDTSLEEEEIKASLEEHFGSCGEMTRITVPKFYDSGAFKGFAILEFKDVDSAKRALNLDQTEIGGHTLLVEKARPRRDGNGSKNGVGWGESSGGGWHSGGGWHSLFFS 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03058 799 MobiDBLite consensus disorder prediction 89 110 - -
Viun3g03058 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 588 656 IPR000504 GO:0003723
Viun3g03058 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 380 IPR000504 GO:0003723
Viun3g03058 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 452 519 IPR000504 GO:0003723
Viun3g03058 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 248 IPR000504 GO:0003723
Viun3g03058 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 687 759 IPR000504 GO:0003723
Viun3g03058 799 SUPERFAMILY RNA-binding domain, RBD 672 793 IPR035979 GO:0003676
Viun3g03058 799 SUPERFAMILY RNA-binding domain, RBD 445 539 IPR035979 GO:0003676
Viun3g03058 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 450 526 IPR000504 GO:0003723
Viun3g03058 799 SMART rrm1_1 587 658 IPR000504 GO:0003723
Viun3g03058 799 SMART rrm1_1 451 522 IPR000504 GO:0003723
Viun3g03058 799 SMART rrm1_1 686 762 IPR000504 GO:0003723
Viun3g03058 799 SMART rrm1_1 312 383 IPR000504 GO:0003723
Viun3g03058 799 SMART rrm1_1 180 251 IPR000504 GO:0003723
Viun3g03058 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 586 662 IPR000504 GO:0003723
Viun3g03058 799 MobiDBLite consensus disorder prediction 19 48 - -
Viun3g03058 799 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 45 278 - -
Viun3g03058 799 MobiDBLite consensus disorder prediction 111 133 - -
Viun3g03058 799 MobiDBLite consensus disorder prediction 74 88 - -
Viun3g03058 799 Coils Coil 497 517 - -
Viun3g03058 799 SUPERFAMILY RNA-binding domain, RBD 172 272 IPR035979 GO:0003676
Viun3g03058 799 MobiDBLite consensus disorder prediction 1 161 - -
Viun3g03058 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 387 IPR000504 GO:0003723
Viun3g03058 799 SUPERFAMILY RNA-binding domain, RBD 301 399 IPR035979 GO:0003676
Viun3g03058 799 Gene3D - 670 795 IPR012677 -
Viun3g03058 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 685 766 IPR000504 GO:0003723
Viun3g03058 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 255 IPR000504 GO:0003723
Viun3g03058 799 MobiDBLite consensus disorder prediction 52 73 - -
Viun3g03058 799 SUPERFAMILY RNA-binding domain, RBD 580 680 IPR035979 GO:0003676
Viun3g03058 799 Gene3D - 401 534 IPR012677 -
Viun3g03058 799 Gene3D - 264 396 IPR012677 -
Viun3g03058 799 Gene3D - 535 669 IPR012677 -
Viun3g03058 799 Gene3D - 93 263 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03058 Viun-Chr3 36960711 36976779 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03058 287 663 Eukaryotic Initiation Factors Gene Family AT2G36660 22.656 3.89e-19 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03058 - - pvu:PHAVU_003G282900g 1145.18