Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03038 ATGTCAACCCCATCATCATCGTCACCGTCACCGTCACCGGCACCGGCGTCATTCACCACCGCACCGCCACCACAGTTATCTTCTCCCATAGTACCTTACAATTCAACTTCACTACCACCATTACCGTCACCATTACCATCTCAGCCCTTACCTCCGGCTTCTCTACCACCACCACCACTATCACCACAATCGTCAAGTTTGCCACCAGCGTCAATTTCTTCCCCTCCGCCACCTCCTCAGAGTTCTTCTCCTTCTCCAGCAGCATCTGCTACACCTGGTGCACGTCCTCCACCTTCTAGGACAAGTCCTTTAGATTCTCATTCTACGCCATCACACACTTCTGCATTGGCTCCACCACCTCCATCAGCAAAAGATTCTGGCCCAGGAAGCAGTGATGGTGGTACTAGTGCAGTGGCTTTTGTTGGTATAGTGACAGCAATTGTATTGTTTGGCTTCATTGGCATTACTATCTGGTGCCTGAGGAGGCAAAAGAAAAGGATTTCTAAGAGTGGTGGTTATGAGTTCCCATCCCCTCTTGGCTCAACATCTGAGTCAGATTTGTCCTTTCTCAAGATCCGTTCTTCAGCTCATCGTTTGCAAAGAGCTTCTGGAGCTAATACACCATCAGGAATGGGAAATTCAAGGTCATTCTTTGCGTATGAAGAACTAATGAAGGCCACAAACAATTTTTCAACTCAAAATCTTTTGGGTGAGGGAGGGTTTGGTTGTGTGTATAAAGGATCACTTCCAGATGGGAGAGAGGTAGCAGTTAAGCAACTGCAAATTGCAGGAAGTCAAGGAAAGAGAGAATTCAAAGCTGAAGTGGAAATTATTAGCCGCATACATCATCGACATTTAGTTTCCTTGGTAGGATACTGCATTTCAGAGAACAAAAGACTACTTGTCTATGACTATGTCCCCAACAGTACCCTTTATTTTCATCTTCATGGGGAAGGTATGCCAGTGCTGGAGTGGACAAACCGTGTTAAAATTGCGGCTGGAGCAGCCAAAGGAATAGCTTATCTCCATGAAGACTGCAATCCTAGGATTATTCACAGGGATATCAAGTCAGCAAACATTCTTTTAGACTACAATTTCGAAGCTCGAGTCTCAGATTTTGGGCTAGCCAGATTAGCAGCTGATGCAAATTCACATGTAACCACACATGTGGTGGGAACTTTTGGATATGTTGCACCTGAATATGTATCAAGTGGTAAATTTACAGAGAAGTCAGATGTATACTCCTTTGGAGTCATGCTTTTGGAGCTCATTACTGGAAGGAAACCAGTGGATGTATCTCAACCAGCAGGTGAAGAGAGTCTAGTTGAATGGGCTCGACCCTTGCTGAATGATGCACTTGAGAGTGAGGAATTTGAGATTTTGAAAGATCCAAAGCTAGGAAAAAGGTACGTTGAAAGTGAAATGATTTGCATGGTTGAAGTTGCTGCTGCTTGCGTGAGACATTCATCTGCCAGAAGACCTCGTATGGGACAGGTTGTTAGAGCTTTTGATGGTTTAGCTACGAGTGATCTTTCAAATGGAATGAGAGTTGGGGATTCTACGCAGCAATCCGCAGAAATAAGATTATTACGTAGAATGGCATTTGGTTACAATTCAGAATTTTTGAGCCACACAAGTTTTAATGCGTAA 1650 0.4436 MSTPSSSSPSPSPAPASFTTAPPPQLSSPIVPYNSTSLPPLPSPLPSQPLPPASLPPPPLSPQSSSLPPASISSPPPPPQSSSPSPAASATPGARPPPSRTSPLDSHSTPSHTSALAPPPPSAKDSGPGSSDGGTSAVAFVGIVTAIVLFGFIGITIWCLRRQKKRISKSGGYEFPSPLGSTSESDLSFLKIRSSAHRLQRASGANTPSGMGNSRSFFAYEELMKATNNFSTQNLLGEGGFGCVYKGSLPDGREVAVKQLQIAGSQGKREFKAEVEIISRIHHRHLVSLVGYCISENKRLLVYDYVPNSTLYFHLHGEGMPVLEWTNRVKIAAGAAKGIAYLHEDCNPRIIHRDIKSANILLDYNFEARVSDFGLARLAADANSHVTTHVVGTFGYVAPEYVSSGKFTEKSDVYSFGVMLLELITGRKPVDVSQPAGEESLVEWARPLLNDALESEEFEILKDPKLGKRYVESEMICMVEVAAACVRHSSARRPRMGQVVRAFDGLATSDLSNGMRVGDSTQQSAEIRLLRRMAFGYNSEFLSHTSFNA 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03038 549 MobiDBLite consensus disorder prediction 1 133 - -
Viun3g03038 549 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 146 533 IPR047117 -
Viun3g03038 549 CDD STKc_IRAK 236 506 - -
Viun3g03038 549 ProSiteProfiles Protein kinase domain profile. 230 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03038 549 FunFam Proline-rich receptor-like protein kinase PERK8 202 305 - -
Viun3g03038 549 Gene3D Phosphorylase Kinase; domain 1 191 305 - -
Viun3g03038 549 Gene3D Transferase(Phosphotransferase) domain 1 306 525 - -
Viun3g03038 549 SMART serkin_6 230 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03038 549 ProSitePatterns Protein kinases ATP-binding region signature. 236 258 IPR017441 GO:0005524
Viun3g03038 549 FunFam proline-rich receptor-like protein kinase PERK8 306 517 - -
Viun3g03038 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 350 362 IPR008271 GO:0004672|GO:0006468
Viun3g03038 549 MobiDBLite consensus disorder prediction 8 99 - -
Viun3g03038 549 SUPERFAMILY Protein kinase-like (PK-like) 208 501 IPR011009 -
Viun3g03038 549 Pfam Protein kinase domain 231 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03038 Viun-Chr3 36795378 36798724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03038 126 549 Trihelix Transcription Factor Family AT5G38560 59.598 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Viun3g03038 Pkinase 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03038 - - gmx:100799296 703.745