Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03033 ATGGAAAATGCTCATGGTTCTATGAGCAACAAGCTTAATGGAAGCCCTGATGAGGGAATATTTCAAATGAATGAAGAGGTGGAGGTGAGGTGTGTAGAGGAGGGGTTTCTAGGATCATGGCACCCTGGGATAGTTCTCAAGTGTGGGAAAGTGAAGTGCTTTGTGAGATACAAGAATGTTCTAAAAAGCGACGGTTCGGAATATCTTGTGACTGCAGTGAGGGTTTCAAAAGCATCGGAATCTTCAAAGTATAGCATGCGCGGTTTCATTCGGCCACCGCCACCTCTGATTCAGTTTGGGAGATTTAACCTTAACTATGGTTTGTGCGTGGATGTAAACTGTCAGGGAGCTTGGTGGGAAGGAGTGATATTTGATCACTGCGATGGAATGCTGAGAAGGAGCGTGTTTTTTCCAGATTTGGGTGATGAAATGCTGATTGAAATTCATCAAATGCGGATTACTCAGGACTGGAATGAAGTTACACGACAATGGAAACTACGAAGAAACTGGGTGTTTCTGGAATTGCTGGAGGAGTACCAGGATGGGGCATTTAGTGTTTCAGCAAAACAAATATGGTATGATATACTGGTAAAACTGAGATTTGGAATGAGGGGAGAGTGGGCATATAATGAGAAAGAATTGTACAGAGAAGCTGTGAGAATGATAATTTGTGAGTACTCAAGACTCAGAGTGAACAATGTTTTCTCAGTTTTAGACTTTCCACCAGAACAGGAATCGGTTGAACCAATGGCTAGTATTGACTTGAACATGGCCTTGTCTGAGAGAGATAATTTTGTGCAGAAAGAAGCTGGTCCTCGTGTTCGAGAGCTTTTACCTGAGTTTGAAATAGAAATTGACCTTGAAGGTGCTCCTGAAGTAGTGTCTGGTGAGAGATGTGAAAGCTCAAGGGATTCAAAGGGCAAAATATCTATGAGTCAAAGCAGTGGAATGCCTCCACAAAGATCAACAAAGGTGTCTGCTCCTAGTCTTTTACCTCCGGATAAACCTCTAACTATTTTGTCTTGGTTGATCGACAACAAAATGGTGTTTCCAAGATCTACCGTGTATTATTACAACGAAAAAGCTTGGCACCATGCAACTTCTAGTTGGACTAGAGGGAAAGCAACTCGCAGTGGAATCAAGTGTCACTGTTGTGACATAGTTTACAGCTTTGCTGGGTTTGAGCATCATGCCAGTGGAATCAGTACCTGCACACCATCTGCTTGTATTTTTTTGAGAGATGGTAAATCACTCTTAGAATGCCAAACGGAAATAATGCAAAATCGGCTGACAAGAGAAACTAACGAAAACCCAAGCATTAATTTCCCTCTGGACGAGAATGACTTGATTTGTTCCCTTTGCCTCTATGGTGGTGAACTTATCTTATGTGATCAGTGTCCATCTTCATTTCACATGACGTGTCTTGGGTTGGAGCATATCCCTGATGGTCAATGGCTTTGCCCACAATGTCGTTGCGGTATTTGTTGCCAAAGCAAACTGGATGAAGATGAGGATGGCCATGCTGCACTTACTTGTGTACAGTGTGAACATAAATATCATGTTAGGTGCCTGGAAAATGGAGGCATAGATTTATCAAGATGTTCAGAAAACTGGTTCTGTGGAAAAAGCTGCGAAAAGATACACGAGGGCCTTCATGGGCTATTAGGAAAGGCAGTTCCAGTGGGTGTGGACAATCTGACATGGACACTGGTGAAGTTTATTGAGCCTGAGTGTGATGATGTTGTTAGAATTAGAGATGATAGCATAGTAGCAGAAAGTTACAGCAAACTCAATCTTGCCCTTTCGGTCATGCATGAATGTTTTGAGTCCCTAGAGCAAAGTTTATCTAGCAGAGATATCATTGAAGATGTTATATTTGGCAGAAGGTCAGAGCTAAGGCGATTAAATTTCCAGGGTTTCTATACTGTACTACTTGCGAGAAATGAAGAAGTGGTTTCTGTGGCTACTGTTAGGGTCCACGGGAATAAGGTGGCAGAAGTACCTTTTGTTGGTACAAGATTACACTACCGTCAACATGGATTTTGTCGCATTCTGATGAGTGGTCTTGAACAGTTGCTGATGCAGTTAGGTGTGGGGAGGCTTGTTTTACCTGCTGTTCCTAGTACGCTAAGGACATGGATGGACTCTTTTGGTTTTGAAAAGATGAATCTTTTTGAGAGGTCTAAATTTCTGGACAACACCTTCTTAAATTTTGAGGAGTCACAGCCCAGATCTCATGGTTTACCTCATAACACTGTTGACCTCAATCGCTCTATTTCAGTATCAGAAGGAGGGATGGTGTATCAGCAAACGGGAAATACTGGTGCAGGCAACAACAATGGCAACAACAATGATTGTGTCACTTGTGCTACTTTTCCAATCGACATGGAGAAAGGATCTGCTAGTGATCAACAGTATCTTAATGGAAGCAGCTCACAGTTGGATCATGAAAATGAAGGTGACGAATACAACAGTGAGTATAGTCGAAAGAAAGTAAGGTTTCTGCATAAGGGGAGCTTCTGA 2523 0.4229 MENAHGSMSNKLNGSPDEGIFQMNEEVEVRCVEEGFLGSWHPGIVLKCGKVKCFVRYKNVLKSDGSEYLVTAVRVSKASESSKYSMRGFIRPPPPLIQFGRFNLNYGLCVDVNCQGAWWEGVIFDHCDGMLRRSVFFPDLGDEMLIEIHQMRITQDWNEVTRQWKLRRNWVFLELLEEYQDGAFSVSAKQIWYDILVKLRFGMRGEWAYNEKELYREAVRMIICEYSRLRVNNVFSVLDFPPEQESVEPMASIDLNMALSERDNFVQKEAGPRVRELLPEFEIEIDLEGAPEVVSGERCESSRDSKGKISMSQSSGMPPQRSTKVSAPSLLPPDKPLTILSWLIDNKMVFPRSTVYYYNEKAWHHATSSWTRGKATRSGIKCHCCDIVYSFAGFEHHASGISTCTPSACIFLRDGKSLLECQTEIMQNRLTRETNENPSINFPLDENDLICSLCLYGGELILCDQCPSSFHMTCLGLEHIPDGQWLCPQCRCGICCQSKLDEDEDGHAALTCVQCEHKYHVRCLENGGIDLSRCSENWFCGKSCEKIHEGLHGLLGKAVPVGVDNLTWTLVKFIEPECDDVVRIRDDSIVAESYSKLNLALSVMHECFESLEQSLSSRDIIEDVIFGRRSELRRLNFQGFYTVLLARNEEVVSVATVRVHGNKVAEVPFVGTRLHYRQHGFCRILMSGLEQLLMQLGVGRLVLPAVPSTLRTWMDSFGFEKMNLFERSKFLDNTFLNFEESQPRSHGLPHNTVDLNRSISVSEGGMVYQQTGNTGAGNNNGNNNDCVTCATFPIDMEKGSASDQQYLNGSSSQLDHENEGDEYNSEYSRKKVRFLHKGSF 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03033 840 Pfam PHD-finger 450 492 IPR019787 -
Viun3g03033 840 SUPERFAMILY FYVE/PHD zinc finger 431 491 IPR011011 -
Viun3g03033 840 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 582 745 IPR000182 GO:0016747
Viun3g03033 840 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 441 504 IPR013083 -
Viun3g03033 840 Gene3D - 560 724 - -
Viun3g03033 840 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 617 727 IPR016181 -
Viun3g03033 840 MobiDBLite consensus disorder prediction 802 828 - -
Viun3g03033 840 Pfam Tify domain binding domain 373 424 IPR032308 -
Viun3g03033 840 ProSiteProfiles Zinc finger PHD-type profile. 448 493 IPR019787 -
Viun3g03033 840 PANTHER PHD FINGER PROTEIN 12 301 776 IPR042163 GO:0003714|GO:0045892
Viun3g03033 840 SMART agenet_At_2 102 159 IPR014002 -
Viun3g03033 840 SMART agenet_At_2 19 81 IPR014002 -
Viun3g03033 840 Pfam Agenet domain 25 95 IPR008395 -
Viun3g03033 840 MobiDBLite consensus disorder prediction 294 329 - -
Viun3g03033 840 SMART PHD_3 450 491 IPR001965 -
Viun3g03033 840 MobiDBLite consensus disorder prediction 306 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03033 Viun-Chr3 36706957 36713608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03033 305 696 PHD Transcription Factor Family AT5G58610 46.000 2.57e-100 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun3g03033 Agenet 6.4e-15 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03033 - - var:108323857 1435.62